| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227568
Identifier: 21227568
GI number: 21227568
Start: 1749758
End: 1750225
Strand: Direct
Name: 21227568
Synonym: MM_1466
Alternate gene names: NA
Gene position: 1749758-1750225 (Clockwise)
Preceding gene: 21227565
Following gene: 21227569
Centisome position: 42.72
GC content: 36.32
Gene sequence:
>468_bases ATGGGGAAAAGAGGAGCAAAACCAAAGTTTACCGATGTTTTCTGTCCTAATAAGGATTGTAAACTCTATGGTATTACTGG AAAAGAAAATATCATAGGCAATGGCACCTATGAAATCAAGAATAAACGAGTTAGAAAATATATCTGCCGCGAATGCGGCA GAGTATTCAATGACAGAACAGGTACTTTTTTTGATAATGTCCGTAAAGATGAATCTGATATCAAACTAGCCATTAAAATG GCTATCAAAGGAATGTCAATACAAGCAATCTCTGATGTACTGGAAGTTCAACCTGCTACAGTTAGTAACTGGTTGTTTCG CGCAGCGAAACAATGTGATATTGTAAATGAAGACTTAATGAAAGATCTCAACATTCGCAAAGTTGAGATGGACGAACTAT GGGTAATAGTTGAAAAAAAGTTACACCAAGAACAGAAATTGAAGATGATGGAGCATGGTTGTGGGTAA
Upstream 100 bases:
>100_bases CTTTTCCTCAAGCAGCAGTTATTTTTCATTAACAATAATTCCGGTGCTCCATTTATATTTAGTTGATATTATATACGTGG AGAAATATAATATCAATATA
Downstream 100 bases:
>100_bases GCTTTGCACCTGAATTCAGGTTAATAATTGATTTTGTACTGGGACCAAGAAAACATTATGTGGCGACCGAATTAGTAAAC ATTACAGATAATCACCTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MGKRGAKPKFTDVFCPNKDCKLYGITGKENIIGNGTYEIKNKRVRKYICRECGRVFNDRTGTFFDNVRKDESDIKLAIKM AIKGMSIQAISDVLEVQPATVSNWLFRAAKQCDIVNEDLMKDLNIRKVEMDELWVIVEKKLHQEQKLKMMEHGCG
Sequences:
>Translated_155_residues MGKRGAKPKFTDVFCPNKDCKLYGITGKENIIGNGTYEIKNKRVRKYICRECGRVFNDRTGTFFDNVRKDESDIKLAIKM AIKGMSIQAISDVLEVQPATVSNWLFRAAKQCDIVNEDLMKDLNIRKVEMDELWVIVEKKLHQEQKLKMMEHGCG >Mature_154_residues GKRGAKPKFTDVFCPNKDCKLYGITGKENIIGNGTYEIKNKRVRKYICRECGRVFNDRTGTFFDNVRKDESDIKLAIKMA IKGMSIQAISDVLEVQPATVSNWLFRAAKQCDIVNEDLMKDLNIRKVEMDELWVIVEKKLHQEQKLKMMEHGCG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17849; Mature: 17718
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 7.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKRGAKPKFTDVFCPNKDCKLYGITGKENIIGNGTYEIKNKRVRKYICRECGRVFNDRT CCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCC GTFFDNVRKDESDIKLAIKMAIKGMSIQAISDVLEVQPATVSNWLFRAAKQCDIVNEDLM CCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH KDLNIRKVEMDELWVIVEKKLHQEQKLKMMEHGCG HCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GKRGAKPKFTDVFCPNKDCKLYGITGKENIIGNGTYEIKNKRVRKYICRECGRVFNDRT CCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCC GTFFDNVRKDESDIKLAIKMAIKGMSIQAISDVLEVQPATVSNWLFRAAKQCDIVNEDLM CCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH KDLNIRKVEMDELWVIVEKKLHQEQKLKMMEHGCG HCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA