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The map label for this gene is rpoM [H]

Identifier: 21227500

GI number: 21227500

Start: 1681991

End: 1682314

Strand: Reverse

Name: rpoM [H]

Synonym: MM_1398

Alternate gene names: 21227500

Gene position: 1682314-1681991 (Counterclockwise)

Preceding gene: 21227501

Following gene: 21227499

Centisome position: 41.07

GC content: 44.44

Gene sequence:

>324_bases
GTGATATTAATGCAGTTCTGTACTAAATGCAAAAGTATGATGTTTCCGAAAGATGGTAACTACCACTGCAGAAAATGTGG
AAGCACAATACCGATTGAAAGCGACGCAAAGAATTTCGTCTCCAAAGCCAAAATTGATGATCACGAAGTAGTTGTACTCG
AAGGAGAACAGACCTCAGGCCTGCCGACAACAAATGCAAAATGTCCGGAGTGCGGGAACAACACTGCAGCCTGGTGGCTA
AGACAGCTCAGGTCTGCTGACGAATCCGAAACCCGTTTCTTCAAATGTACAAAATGCGGGTATACATGGAGAGAATACGA
CTGA

Upstream 100 bases:

>100_bases
TTAAAATCAGGCTCTGATGCTGCTGCTGTAGAACTTTTTGAGCTTGATTCTATTCCTGAGCTGGCTTTTGACCATAATAA
AATGATAAATGAAGCAAAAA

Downstream 100 bases:

>100_bases
ATTTCATAAACACTTCTTACGGGCCTTTCTTAAAAACGTACTTCTGAAAAAATATAATACCGAAATATAGACTTCTGGAT
GACCATTTCGAGGTCAGAAC

Product: DNA-directed RNA polymerase subunit M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MILMQFCTKCKSMMFPKDGNYHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQTSGLPTTNAKCPECGNNTAAWWL
RQLRSADESETRFFKCTKCGYTWREYD

Sequences:

>Translated_107_residues
MILMQFCTKCKSMMFPKDGNYHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQTSGLPTTNAKCPECGNNTAAWWL
RQLRSADESETRFFKCTKCGYTWREYD
>Mature_107_residues
MILMQFCTKCKSMMFPKDGNYHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQTSGLPTTNAKCPECGNNTAAWWL
RQLRSADESETRFFKCTKCGYTWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320250, Length=111, Percent_Identity=31.5315315315315, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 12259; Mature: 12259

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
11.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILMQFCTKCKSMMFPKDGNYHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQTSG
CCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCC
LPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWREYD
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MILMQFCTKCKSMMFPKDGNYHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQTSG
CCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCC
LPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWREYD
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]