| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is ppx [H]
Identifier: 21227478
GI number: 21227478
Start: 1649935
End: 1651566
Strand: Direct
Name: ppx [H]
Synonym: MM_1376
Alternate gene names: 21227478
Gene position: 1649935-1651566 (Clockwise)
Preceding gene: 21227477
Following gene: 21227480
Centisome position: 40.28
GC content: 46.26
Gene sequence:
>1632_bases ATGGAACCCGAGAAAATTTCAGAAGGCAGGGTTGTTGCGTTTATTGATATAGGGACCAACTCGGTCCGGCTTCTTCTGGT CCGGATCAATCCTAATGGGTCTTACCAGCCCCTGACCAAACAGAAGGAAACGGTGAGGCTTGGAGAAAAGGAGTTTATAG ACAGGATCCTCCAGCCAGAAGCTATGGAGCGGGCAGCCTTTGTCTGTAAGAAGTTTATGGAGCTTTCAAGGGCTTACAGG GTAGAAGAGATTATAGCCGTGGCTACCTCTGCGACCCGGGACGCAAGCAATAAAGTCCAGCTCCTTGAAATGATTAAAAA GGAAGCAAACCTCGAGGTCTGCACGATTTCAGGTTCGGAAGAAGCCCGTCTGATTTATCTGGGGGTTTCGAGCGGGCTCA GACTCGGAAACTCAAAAGCCATTTTTATCGACATCGGGGGCGGAAGCACTGAAGTGTCTGTAGGTGACCAGAACCAGTAT TATTTTCTTCACTCCCTTAACCTTGGGTCAATTCGCCTGACAAATATGTTCCTTCCGGATGAAACCGGCCCTGTCTCTGA GGAACGTTATGAACAGATCAAGGCGTACATCCGGCGCAAGAGTGCGGACATAATTAAAGAGCTTTCCAGATATACGGTAA ATTTTGTAATTGGAAGTTCGGGAACTATTGAAAACCTTGCCAAAATCGCCTTTGTTTACCTGCATAAGACAGCTCATGAA AGCTTTGAGAAACTTGAGTATGAAGACCTGAAGAAGATTGTCAGGGCAATGTGTGCCCTTTCGCTTGAAGAAAGACGTAA ATTCCCCGGAATAAACTCACAGAGAGCAGACATAATCCTTGCAGGGGCTGCAATTATAGAGACTTTTATGGAAGAACTCG GACTTTCCGAGATTACGGTCAGTAAGCGCGGGTTAAGGGAAGGCCTTCTCGTAGACTATATCTCGAAGAGTGAGTTCTCG TATTTGGTCACTCAGATGTCGGTAAGGAAGCGCAGCATTATGCAGCTCGGCCTTGCCTGCAATTTTGATGAGGAACATGC CCATACAGTTTCAAGGCTCGCTCTTGAACTCTTTGACAGTATTCAGGCTCTCGGCATCTATGAGTTTGAGGAGAGTGAGA GAGAGCTTCTCGAATACGGTGCAACCCTGCACGACATAGGAACATTCCTCTCATACGATACTCATCAGGCACATGCCTAT CACCTTATAAGAGAGAGCAACCTGCCTGGTTTCCAGCCTGAAGAAATCGAAATCATTGCAAATCTTGCCTATTTCCACAG AAAAAACACTCCTAAAAAGAAACACCCCAACCTTGAAGGGTTGAGCAAAGAATCTGTAAAAAGTATAAGGGCGCTCAGTG CCCTGCTCCGTATTGCCGAAGGGCTTGACCGCTCCCATACCGGCATAGTGTCCCATGTCCGTTTCTATATAGCCTCCACA GAGAGCCTTGTGCTTGAGATGCATGCTCAGAAGGAATGTCAGCTCGAAATCTGGGAAGTCGAGAAACATAAAAAGTACTT TAAGAAAATTTTCGGATATTCTCTCCAGTCCAAGGCAATTATAGAACAGACTGCGGGAACCCCATTAATTTTCAAAGGAA ATGTTGAAATTGAGGAAATGCCAAGGGACTGA
Upstream 100 bases:
>100_bases AGTCTCAAATAGAATAAAAATGTGAACGAATATTGTGAAGCTTATGAAGCTCTCGAATCCTTCAAGAAAAACGAAAGGCA GGGCTTTCAGGTGGTCGTAA
Downstream 100 bases:
>100_bases AACTTATTCGTGAACGGGACTCTTCCAGAAATGGAACCTTTTCAAAACTGGAACCTTTTCAAAACTGGTTTTTTCGGTTT AAAGTTGTTTCAAAAATAAA
Product: exopolyphosphatase
Products: NA
Alternate protein names: ExopolyPase; Metaphosphatase [H]
Number of amino acids: Translated: 543; Mature: 543
Protein sequence:
>543_residues MEPEKISEGRVVAFIDIGTNSVRLLLVRINPNGSYQPLTKQKETVRLGEKEFIDRILQPEAMERAAFVCKKFMELSRAYR VEEIIAVATSATRDASNKVQLLEMIKKEANLEVCTISGSEEARLIYLGVSSGLRLGNSKAIFIDIGGGSTEVSVGDQNQY YFLHSLNLGSIRLTNMFLPDETGPVSEERYEQIKAYIRRKSADIIKELSRYTVNFVIGSSGTIENLAKIAFVYLHKTAHE SFEKLEYEDLKKIVRAMCALSLEERRKFPGINSQRADIILAGAAIIETFMEELGLSEITVSKRGLREGLLVDYISKSEFS YLVTQMSVRKRSIMQLGLACNFDEEHAHTVSRLALELFDSIQALGIYEFEESERELLEYGATLHDIGTFLSYDTHQAHAY HLIRESNLPGFQPEEIEIIANLAYFHRKNTPKKKHPNLEGLSKESVKSIRALSALLRIAEGLDRSHTGIVSHVRFYIAST ESLVLEMHAQKECQLEIWEVEKHKKYFKKIFGYSLQSKAIIEQTAGTPLIFKGNVEIEEMPRD
Sequences:
>Translated_543_residues MEPEKISEGRVVAFIDIGTNSVRLLLVRINPNGSYQPLTKQKETVRLGEKEFIDRILQPEAMERAAFVCKKFMELSRAYR VEEIIAVATSATRDASNKVQLLEMIKKEANLEVCTISGSEEARLIYLGVSSGLRLGNSKAIFIDIGGGSTEVSVGDQNQY YFLHSLNLGSIRLTNMFLPDETGPVSEERYEQIKAYIRRKSADIIKELSRYTVNFVIGSSGTIENLAKIAFVYLHKTAHE SFEKLEYEDLKKIVRAMCALSLEERRKFPGINSQRADIILAGAAIIETFMEELGLSEITVSKRGLREGLLVDYISKSEFS YLVTQMSVRKRSIMQLGLACNFDEEHAHTVSRLALELFDSIQALGIYEFEESERELLEYGATLHDIGTFLSYDTHQAHAY HLIRESNLPGFQPEEIEIIANLAYFHRKNTPKKKHPNLEGLSKESVKSIRALSALLRIAEGLDRSHTGIVSHVRFYIAST ESLVLEMHAQKECQLEIWEVEKHKKYFKKIFGYSLQSKAIIEQTAGTPLIFKGNVEIEEMPRD >Mature_543_residues MEPEKISEGRVVAFIDIGTNSVRLLLVRINPNGSYQPLTKQKETVRLGEKEFIDRILQPEAMERAAFVCKKFMELSRAYR VEEIIAVATSATRDASNKVQLLEMIKKEANLEVCTISGSEEARLIYLGVSSGLRLGNSKAIFIDIGGGSTEVSVGDQNQY YFLHSLNLGSIRLTNMFLPDETGPVSEERYEQIKAYIRRKSADIIKELSRYTVNFVIGSSGTIENLAKIAFVYLHKTAHE SFEKLEYEDLKKIVRAMCALSLEERRKFPGINSQRADIILAGAAIIETFMEELGLSEITVSKRGLREGLLVDYISKSEFS YLVTQMSVRKRSIMQLGLACNFDEEHAHTVSRLALELFDSIQALGIYEFEESERELLEYGATLHDIGTFLSYDTHQAHAY HLIRESNLPGFQPEEIEIIANLAYFHRKNTPKKKHPNLEGLSKESVKSIRALSALLRIAEGLDRSHTGIVSHVRFYIAST ESLVLEMHAQKECQLEIWEVEKHKKYFKKIFGYSLQSKAIIEQTAGTPLIFKGNVEIEEMPRD
Specific function: Degradation of inorganic polyphosphates. Orthophosphate is released progressively from the ends of polyphosphate [H]
COG id: COG0248
COG function: function code FP; Exopolyphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gppA/ppx family [H]
Homologues:
Organism=Escherichia coli, GI48994966, Length=419, Percent_Identity=29.5942720763723, Blast_Score=156, Evalue=4e-39, Organism=Escherichia coli, GI1788848, Length=510, Percent_Identity=25.0980392156863, Blast_Score=154, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022371 - InterPro: IPR003695 [H]
Pfam domain/function: PF02541 Ppx-GppA [H]
EC number: =3.6.1.11 [H]
Molecular weight: Translated: 61549; Mature: 61549
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPEKISEGRVVAFIDIGTNSVRLLLVRINPNGSYQPLTKQKETVRLGEKEFIDRILQPE CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHCHH AMERAAFVCKKFMELSRAYRVEEIIAVATSATRDASNKVQLLEMIKKEANLEVCTISGSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCC EARLIYLGVSSGLRLGNSKAIFIDIGGGSTEVSVGDQNQYYFLHSLNLGSIRLTNMFLPD CCEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCC ETGPVSEERYEQIKAYIRRKSADIIKELSRYTVNFVIGSSGTIENLAKIAFVYLHKTAHE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHH SFEKLEYEDLKKIVRAMCALSLEERRKFPGINSQRADIILAGAAIIETFMEELGLSEITV HHHHCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEH SKRGLREGLLVDYISKSEFSYLVTQMSVRKRSIMQLGLACNFDEEHAHTVSRLALELFDS HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH IQALGIYEFEESERELLEYGATLHDIGTFLSYDTHQAHAYHLIRESNLPGFQPEEIEIIA HHHHEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHEEECCCCCCCCCCHHHHHH NLAYFHRKNTPKKKHPNLEGLSKESVKSIRALSALLRIAEGLDRSHTGIVSHVRFYIAST HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC ESLVLEMHAQKECQLEIWEVEKHKKYFKKIFGYSLQSKAIIEQTAGTPLIFKGNVEIEEM HHHHEEHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEECCCCHHCC PRD CCC >Mature Secondary Structure MEPEKISEGRVVAFIDIGTNSVRLLLVRINPNGSYQPLTKQKETVRLGEKEFIDRILQPE CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHCHH AMERAAFVCKKFMELSRAYRVEEIIAVATSATRDASNKVQLLEMIKKEANLEVCTISGSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCC EARLIYLGVSSGLRLGNSKAIFIDIGGGSTEVSVGDQNQYYFLHSLNLGSIRLTNMFLPD CCEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCC ETGPVSEERYEQIKAYIRRKSADIIKELSRYTVNFVIGSSGTIENLAKIAFVYLHKTAHE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHH SFEKLEYEDLKKIVRAMCALSLEERRKFPGINSQRADIILAGAAIIETFMEELGLSEITV HHHHCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEH SKRGLREGLLVDYISKSEFSYLVTQMSVRKRSIMQLGLACNFDEEHAHTVSRLALELFDS HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH IQALGIYEFEESERELLEYGATLHDIGTFLSYDTHQAHAYHLIRESNLPGFQPEEIEIIA HHHHEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHEEECCCCCCCCCCHHHHHH NLAYFHRKNTPKKKHPNLEGLSKESVKSIRALSALLRIAEGLDRSHTGIVSHVRFYIAST HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC ESLVLEMHAQKECQLEIWEVEKHKKYFKKIFGYSLQSKAIIEQTAGTPLIFKGNVEIEEM HHHHEEHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEECCCCHHCC PRD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382967; 10984043 [H]