| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21227396
Identifier: 21227396
GI number: 21227396
Start: 1536568
End: 1536846
Strand: Reverse
Name: 21227396
Synonym: MM_1294
Alternate gene names: NA
Gene position: 1536846-1536568 (Counterclockwise)
Preceding gene: 21227397
Following gene: 21227393
Centisome position: 37.52
GC content: 44.8
Gene sequence:
>279_bases ATGCACAAGGAAGAACTAATACAACTGCACACATATATGGCTCAAATGAAGAGGTACTTTGAGAGGCACGGTGTAACGCA CGAGTTCGACGACTATAAGGCTTTATCGATAAGCCCTGTCCACATCCACAGGAGCAAGGCGGATCACAAGCGCGCAATTT TTATTTTAGGAGGCGAGCTTGCCACTCTCATGTCAAGGGATGACCCTATCTTTGAAGAAGCGTCTGCCCATATGAGAGAT TCCATGAATTCCGTCATTAAACTTATCGGTAATAACTGA
Upstream 100 bases:
>100_bases TCTATTAACTAAAAGTAGGAAGAATATTTCCTCGGGTAATTCTTTTATTCGGTTCAAGATAATATTAAATTGATCTTGTA AAATTGTAGGTCTGTTCGCT
Downstream 100 bases:
>100_bases TAGGGCCCCTTATAGTAGTAAAGAATTCGTTGTCCGAAAATACGGGTTCGAGATATTTTTGTTTTGAGATCAAAAGGCGG TATGGGTGCAGATGCATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 92; Mature: 92
Protein sequence:
>92_residues MHKEELIQLHTYMAQMKRYFERHGVTHEFDDYKALSISPVHIHRSKADHKRAIFILGGELATLMSRDDPIFEEASAHMRD SMNSVIKLIGNN
Sequences:
>Translated_92_residues MHKEELIQLHTYMAQMKRYFERHGVTHEFDDYKALSISPVHIHRSKADHKRAIFILGGELATLMSRDDPIFEEASAHMRD SMNSVIKLIGNN >Mature_92_residues MHKEELIQLHTYMAQMKRYFERHGVTHEFDDYKALSISPVHIHRSKADHKRAIFILGGELATLMSRDDPIFEEASAHMRD SMNSVIKLIGNN
Specific function: Unknown
COG id: COG1745
COG function: function code R; Predicted metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0058 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002753 - InterPro: IPR023133 [H]
Pfam domain/function: PF01893 UPF0058 [H]
EC number: NA
Molecular weight: Translated: 10707; Mature: 10707
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.5 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.5 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKEELIQLHTYMAQMKRYFERHGVTHEFDDYKALSISPVHIHRSKADHKRAIFILGGEL CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCEEEEEECCHH ATLMSRDDPIFEEASAHMRDSMNSVIKLIGNN HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MHKEELIQLHTYMAQMKRYFERHGVTHEFDDYKALSISPVHIHRSKADHKRAIFILGGEL CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCEEEEEECCHH ATLMSRDDPIFEEASAHMRDSMNSVIKLIGNN HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]