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The map label for this gene is ycfH [C]

Identifier: 21227387

GI number: 21227387

Start: 1526654

End: 1527427

Strand: Direct

Name: ycfH [C]

Synonym: MM_1285

Alternate gene names: 21227387

Gene position: 1526654-1527427 (Clockwise)

Preceding gene: 21227386

Following gene: 21227388

Centisome position: 37.27

GC content: 46.64

Gene sequence:

>774_bases
ATGGAATACAAACCCATGCCTTATCCAATCATTGATTCTCACTGTCACCTTGATTTTCCAAAATTTAACCCTGACAGGGA
AGAAGCCATTCAGAGAGCCCGAAAAGCAGGAGTTGTCGGGATGGTCAACTCCGGAATTTCCCTTAAAGGAAACCGCATAA
GTCTTGAACTCGCGGAAAAGAACGAGGATATTCATGCCGCACTGGGGCTTAGCCCTGATATCGGCAGGGAAGGCAGTGAT
AAAGATATAAATGCAATCCTTGCCCAGATAGAAGCTAATGCAGGAAAAGCGGTAGCTATCGGAGAAGCCGGCCTAGATTT
TCAGGACTGCAAAACAGACGAAGAACGTAGAAGACAAACAGCTTCATTTAAAAAGGTGATCGAGCTTGCAAAAAACCTGG
AAAAACCTCTTGTTGTGCATGCCAGAATGGCTGAAGCTGAAGTCCTGGAGCTTGCCAGGGACGTAGACACAGTAATTTAT
CACTGCTACAGCGGCTCTGTTGAAACCATGAAGGAAATCGTGGACGCAGGCTACTACATCTCCCTGGCAACACTTGTCTG
TTTTTCCGAACATCACCAGACCCTTGCAGCAGAAGTGCCCCCTGAAAACCTGCTCCTCGAAACAGACAGTCCTTTCCTTT
CCCCGCGCAGGGGCAGAAACGAGCCTGCATTTATTGTGGATTCGATCCCTGTAGTGGCAGAATATAAGGAAATGGAACCT
GCAGAGATTGCTAAATTTGCAACTGAAAACGCACGCAGAGTTTTCAAGATATAA

Upstream 100 bases:

>100_bases
CGAAGATATCAGCTCAAAACCCAAAATCGGATAAGGTCCGGAATCTTCTCTTTTTTTGGGTTTGTATTCCCGAAGCATGT
ATAAAGTAAAATAAAATGAA

Downstream 100 bases:

>100_bases
AATTTCAGTAGTAATCAGGAAGAGGGAATCAGGAAGAGAAAATCAGGAAGAGGCTTCAAGAAAAAAAGGAAAGAAAGGGA
AGAAAAATAAAAGAAAGGGA

Product: Sec-independent transport protein TatD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MEYKPMPYPIIDSHCHLDFPKFNPDREEAIQRARKAGVVGMVNSGISLKGNRISLELAEKNEDIHAALGLSPDIGREGSD
KDINAILAQIEANAGKAVAIGEAGLDFQDCKTDEERRRQTASFKKVIELAKNLEKPLVVHARMAEAEVLELARDVDTVIY
HCYSGSVETMKEIVDAGYYISLATLVCFSEHHQTLAAEVPPENLLLETDSPFLSPRRGRNEPAFIVDSIPVVAEYKEMEP
AEIAKFATENARRVFKI

Sequences:

>Translated_257_residues
MEYKPMPYPIIDSHCHLDFPKFNPDREEAIQRARKAGVVGMVNSGISLKGNRISLELAEKNEDIHAALGLSPDIGREGSD
KDINAILAQIEANAGKAVAIGEAGLDFQDCKTDEERRRQTASFKKVIELAKNLEKPLVVHARMAEAEVLELARDVDTVIY
HCYSGSVETMKEIVDAGYYISLATLVCFSEHHQTLAAEVPPENLLLETDSPFLSPRRGRNEPAFIVDSIPVVAEYKEMEP
AEIAKFATENARRVFKI
>Mature_257_residues
MEYKPMPYPIIDSHCHLDFPKFNPDREEAIQRARKAGVVGMVNSGISLKGNRISLELAEKNEDIHAALGLSPDIGREGSD
KDINAILAQIEANAGKAVAIGEAGLDFQDCKTDEERRRQTASFKKVIELAKNLEKPLVVHARMAEAEVLELARDVDTVIY
HCYSGSVETMKEIVDAGYYISLATLVCFSEHHQTLAAEVPPENLLLETDSPFLSPRRGRNEPAFIVDSIPVVAEYKEMEP
AEIAKFATENARRVFKI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=258, Percent_Identity=31.7829457364341, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI110349734, Length=258, Percent_Identity=31.7829457364341, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI226061853, Length=265, Percent_Identity=30.9433962264151, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI14042943, Length=271, Percent_Identity=26.1992619926199, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061595, Length=229, Percent_Identity=30.5676855895196, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061614, Length=252, Percent_Identity=29.7619047619048, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI225903439, Length=248, Percent_Identity=25.8064516129032, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI225903424, Length=228, Percent_Identity=25.4385964912281, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=31.5384615384615, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=31.0077519379845, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI48994985, Length=263, Percent_Identity=28.1368821292776, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71980746, Length=259, Percent_Identity=32.046332046332, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=286, Percent_Identity=26.2237762237762, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17565396, Length=303, Percent_Identity=28.3828382838284, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648690, Length=284, Percent_Identity=26.4084507042254, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24586117, Length=242, Percent_Identity=25.6198347107438, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221330018, Length=242, Percent_Identity=25.6198347107438, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28550; Mature: 28550

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYKPMPYPIIDSHCHLDFPKFNPDREEAIQRARKAGVVGMVNSGISLKGNRISLELAEK
CCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEECCCEEEEEEECC
NEDIHAALGLSPDIGREGSDKDINAILAQIEANAGKAVAIGEAGLDFQDCKTDEERRRQT
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCHHHHHHH
ASFKKVIELAKNLEKPLVVHARMAEAEVLELARDVDTVIYHCYSGSVETMKEIVDAGYYI
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
SLATLVCFSEHHQTLAAEVPPENLLLETDSPFLSPRRGRNEPAFIVDSIPVVAEYKEMEP
HHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCH
AEIAKFATENARRVFKI
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEYKPMPYPIIDSHCHLDFPKFNPDREEAIQRARKAGVVGMVNSGISLKGNRISLELAEK
CCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEECCCEEEEEEECC
NEDIHAALGLSPDIGREGSDKDINAILAQIEANAGKAVAIGEAGLDFQDCKTDEERRRQT
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCHHHHHHH
ASFKKVIELAKNLEKPLVVHARMAEAEVLELARDVDTVIYHCYSGSVETMKEIVDAGYYI
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
SLATLVCFSEHHQTLAAEVPPENLLLETDSPFLSPRRGRNEPAFIVDSIPVVAEYKEMEP
HHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCH
AEIAKFATENARRVFKI
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]