| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227374
Identifier: 21227374
GI number: 21227374
Start: 1506859
End: 1508001
Strand: Direct
Name: 21227374
Synonym: MM_1272
Alternate gene names: NA
Gene position: 1506859-1508001 (Clockwise)
Preceding gene: 21227373
Following gene: 21227375
Centisome position: 36.79
GC content: 48.21
Gene sequence:
>1143_bases TTGAAAAAGAAAAGCGTCTGGATAAAAGCCGATGAAGGCGGATGGGAAGAACAGAAAGAGAGGATCACAACAGGCCTGGA ATCCGGAGCCGACTGTGTACTTGTAAATCCGGGAGATGTAGAAAAAGTCAGGGAACTCGGAAACATTACAGTTGCAGCCT TTGCCCGCGACAATAAGTCAGGAGCCGACATCGTGGTCGTGGGAAAGAGAGGAGAAGGTGACGGAACAAAACCCCTGCCT CAGGAAATTCCGGGTTCTTTTGATGTAAACGCAGCAACCCTGCTCACCGACAAAGGCGTAACCGTAGGCGGATATGTGGT CATAAAGGACAGAAGCTACGAACGCTTCGCAGCAGAAATGGGAAAAATCTGCGATTACCTGCTTGTTACCGGCACTGACT GGAAAGTTATCCCTCTCGAAAACCTGATTGCTGACCTCCAGCGTGAGAAAGTAAAGATTATTTTTGGAGTAAAAAGTGCC GAGGAAGCAAGGCTCGCCTTCCAGACTCTTGAAACAGGAGCTGATGGAGTCCTCCTTGACAGCGGAAACCCGCAGGAAAT AAAAGACACAATTAAAGCTGCAAGAGAACTTGAAAGCGAAAGCACAGAACTTGAATCCGCAGTTGTAACCAGGGTAGAAC CTCTTGGAATGGGGGACAGGGTCTGTGTGGATACCTGCAACCTCATGCAGCGCGGAGAAGGAATGCTTATAGGTTCACAG GCAAGCGGGATGTTCCTGGTAAATTCGGAGTCTGACGACAGTCCTTACGTGGCAGCCCGCCCATTCAGGGTAAATGCAGG TGCAGTTCATTCTTATATAAAAATTGGAGACAAAACCCGCTATCTTTCAGAACTCCAGGCTGGAGACAGCGTTACTATCA TAGACTCAAGAGGGAAGCAGAGGGAAGGAATAGTTGGCAGGATAAAGATAGAAAGCCGCCCACTTATGCTAATTGAAGCA AAAGCCGGAGACCGGACTTTAACCGCAATCCTGCAAAATGCCGAAACCATCAAGCTTGTAGGAAAGGGCGGAACCCCTAT CTCGGTTGCAAAGCTCAAAAAAGGTGATGAGGTTCTGGTACGCCTCGAAGAAGGAGCCAGGCATTTCGGCAAAAAAATCG AAGAGACGATTATAGAGAAATAA
Upstream 100 bases:
>100_bases GAAAAAGACACAGAATGAAGGATTCCCAAGCAGGGTTTCGGAGAATGTACCGGAATAAATCCGGAATAAAAACAGAATTT ATGAACGGGGTTGAAAGCCT
Downstream 100 bases:
>100_bases AGCAGGAAAGACTCTGTAAAGTCGATAGCAGCAGATTTCTACTCCCGGTTCGGAGAAAGCATGACTCAAATAGGCTCGTT TGACCTTGAAAAGAAAACTG
Product: 3-dehydroquinate synthase
Products: 3-dehydroquinate; phosphate
Alternate protein names: DHQ synthase [H]
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MKKKSVWIKADEGGWEEQKERITTGLESGADCVLVNPGDVEKVRELGNITVAAFARDNKSGADIVVVGKRGEGDGTKPLP QEIPGSFDVNAATLLTDKGVTVGGYVVIKDRSYERFAAEMGKICDYLLVTGTDWKVIPLENLIADLQREKVKIIFGVKSA EEARLAFQTLETGADGVLLDSGNPQEIKDTIKAARELESESTELESAVVTRVEPLGMGDRVCVDTCNLMQRGEGMLIGSQ ASGMFLVNSESDDSPYVAARPFRVNAGAVHSYIKIGDKTRYLSELQAGDSVTIIDSRGKQREGIVGRIKIESRPLMLIEA KAGDRTLTAILQNAETIKLVGKGGTPISVAKLKKGDEVLVRLEEGARHFGKKIEETIIEK
Sequences:
>Translated_380_residues MKKKSVWIKADEGGWEEQKERITTGLESGADCVLVNPGDVEKVRELGNITVAAFARDNKSGADIVVVGKRGEGDGTKPLP QEIPGSFDVNAATLLTDKGVTVGGYVVIKDRSYERFAAEMGKICDYLLVTGTDWKVIPLENLIADLQREKVKIIFGVKSA EEARLAFQTLETGADGVLLDSGNPQEIKDTIKAARELESESTELESAVVTRVEPLGMGDRVCVDTCNLMQRGEGMLIGSQ ASGMFLVNSESDDSPYVAARPFRVNAGAVHSYIKIGDKTRYLSELQAGDSVTIIDSRGKQREGIVGRIKIESRPLMLIEA KAGDRTLTAILQNAETIKLVGKGGTPISVAKLKKGDEVLVRLEEGARHFGKKIEETIIEK >Mature_380_residues MKKKSVWIKADEGGWEEQKERITTGLESGADCVLVNPGDVEKVRELGNITVAAFARDNKSGADIVVVGKRGEGDGTKPLP QEIPGSFDVNAATLLTDKGVTVGGYVVIKDRSYERFAAEMGKICDYLLVTGTDWKVIPLENLIADLQREKVKIIFGVKSA EEARLAFQTLETGADGVLLDSGNPQEIKDTIKAARELESESTELESAVVTRVEPLGMGDRVCVDTCNLMQRGEGMLIGSQ ASGMFLVNSESDDSPYVAARPFRVNAGAVHSYIKIGDKTRYLSELQAGDSVTIIDSRGKQREGIVGRIKIESRPLMLIEA KAGDRTLTAILQNAETIKLVGKGGTPISVAKLKKGDEVLVRLEEGARHFGKKIEETIIEK
Specific function: Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3- dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis [H]
COG id: COG1465
COG function: function code E; Predicted alternative 3-dehydroquinate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the archaeal-type DHQ synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002812 - ProDom: PD017907 [H]
Pfam domain/function: PF01959 DHQS [H]
EC number: 4.2.3.4
Molecular weight: Translated: 41164; Mature: 41164
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKSVWIKADEGGWEEQKERITTGLESGADCVLVNPGDVEKVRELGNITVAAFARDNKS CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCEEEEEEECCCCC GADIVVVGKRGEGDGTKPLPQEIPGSFDVNAATLLTDKGVTVGGYVVIKDRSYERFAAEM CCCEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCEECCEEEEECCCHHHHHHHH GKICDYLLVTGTDWKVIPLENLIADLQREKVKIIFGVKSAEEARLAFQTLETGADGVLLD HHHHCEEEEECCCEEEEEHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEC SGNPQEIKDTIKAARELESESTELESAVVTRVEPLGMGDRVCVDTCNLMQRGEGMLIGSQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCEEEECC ASGMFLVNSESDDSPYVAARPFRVNAGAVHSYIKIGDKTRYLSELQAGDSVTIIDSRGKQ CCCEEEEECCCCCCCEEEECCEEECCHHHHHEEEECCHHHHHHHHCCCCEEEEEECCCCC REGIVGRIKIESRPLMLIEAKAGDRTLTAILQNAETIKLVGKGGTPISVAKLKKGDEVLV CCCCEEEEEECCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEE RLEEGARHFGKKIEETIIEK EEHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKKSVWIKADEGGWEEQKERITTGLESGADCVLVNPGDVEKVRELGNITVAAFARDNKS CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCEEEEEEECCCCC GADIVVVGKRGEGDGTKPLPQEIPGSFDVNAATLLTDKGVTVGGYVVIKDRSYERFAAEM CCCEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCEECCEEEEECCCHHHHHHHH GKICDYLLVTGTDWKVIPLENLIADLQREKVKIIFGVKSAEEARLAFQTLETGADGVLLD HHHHCEEEEECCCEEEEEHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEC SGNPQEIKDTIKAARELESESTELESAVVTRVEPLGMGDRVCVDTCNLMQRGEGMLIGSQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCEEEECC ASGMFLVNSESDDSPYVAARPFRVNAGAVHSYIKIGDKTRYLSELQAGDSVTIIDSRGKQ CCCEEEEECCCCCCCEEEECCEEECCHHHHHEEEECCHHHHHHHHCCCCEEEEEECCCCC REGIVGRIKIESRPLMLIEAKAGDRTLTAILQNAETIKLVGKGGTPISVAKLKKGDEVLV CCCCEEEEEECCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEE RLEEGARHFGKKIEETIIEK EEHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3-deoxy-arabino-heptulonate 7-phosphate
Specific reaction: 3-deoxy-arabino-heptulonate 7-phosphate = 3-dehydroquinate + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]