| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227366
Identifier: 21227366
GI number: 21227366
Start: 1499821
End: 1500372
Strand: Direct
Name: 21227366
Synonym: MM_1264
Alternate gene names: NA
Gene position: 1499821-1500372 (Clockwise)
Preceding gene: 21227365
Following gene: 21227367
Centisome position: 36.61
GC content: 41.67
Gene sequence:
>552_bases ATGAAAGGAAGAATAGATGGAAAGTACATAAAAAGTATCAGGCATGTCAAAACTGTAAGATTGACAGCAGTCCTGTTTGC ATTCTTTATAGTTGCTCTTTCCGGCTGTGTTGAAAACGTCGAGGACGAGAAGAATAACACCACTGAAATAGAATACACTT ACGGTATGGCAAATGTGGAGAGTATTGATATTCTGATTATGGAATCTTTTCCAGTGCAGATAAATGTAATAGCAGAAGGC TATCTGCCTGATGGATGCACCAGGATTGACGAAATAAAGACCGAAAGGGAAGGAGAAACCTTCAATATCAATATCACGAC AAAGCGTCCAAAAGATGCAATCTGCACCCAGGCTATAGAGAGCTTCAGGGAAACGATCCCCCTGGAAGTCCAGGGTCTCA GAGCCGGAAATTATACTGTAAATGTAAATGGAGTGACCGGATCTTTTGAACTTACTGTCGATAATATCCTTAAGGAGACG CCGGACTCTATGCCACCGGGACAGCAGGTAGTAACAGAAGCTGGTAATGGGACAAATATAAATATCGAATAG
Upstream 100 bases:
>100_bases ATTAAAAAATGAAAGCTACGAACAGAACTGAAGTTTAAGCAAAAGATAAATTGGAACAGGCTTATTTTTTCATCTATATA TTAAAAAAAGAGGGAGACAG
Downstream 100 bases:
>100_bases GGCGAGAGTTTCTATCTTAGACTTAAGGATAACCCGTCTACAGGCTATTTGTGGGAATTAAACCTGAGCCAGGGACTTAA TCTCACTGATATCAATGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: ORF11; ORFC [H]
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MKGRIDGKYIKSIRHVKTVRLTAVLFAFFIVALSGCVENVEDEKNNTTEIEYTYGMANVESIDILIMESFPVQINVIAEG YLPDGCTRIDEIKTEREGETFNINITTKRPKDAICTQAIESFRETIPLEVQGLRAGNYTVNVNGVTGSFELTVDNILKET PDSMPPGQQVVTEAGNGTNINIE
Sequences:
>Translated_183_residues MKGRIDGKYIKSIRHVKTVRLTAVLFAFFIVALSGCVENVEDEKNNTTEIEYTYGMANVESIDILIMESFPVQINVIAEG YLPDGCTRIDEIKTEREGETFNINITTKRPKDAICTQAIESFRETIPLEVQGLRAGNYTVNVNGVTGSFELTVDNILKET PDSMPPGQQVVTEAGNGTNINIE >Mature_183_residues MKGRIDGKYIKSIRHVKTVRLTAVLFAFFIVALSGCVENVEDEKNNTTEIEYTYGMANVESIDILIMESFPVQINVIAEG YLPDGCTRIDEIKTEREGETFNINITTKRPKDAICTQAIESFRETIPLEVQGLRAGNYTVNVNGVTGSFELTVDNILKET PDSMPPGQQVVTEAGNGTNINIE
Specific function: Could be a silencing control element for the regulation of the restriction system [H]
COG id: COG5513
COG function: function code S; Predicted secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20266; Mature: 20266
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGRIDGKYIKSIRHVKTVRLTAVLFAFFIVALSGCVENVEDEKNNTTEIEYTYGMANVE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC SIDILIMESFPVQINVIAEGYLPDGCTRIDEIKTEREGETFNINITTKRPKDAICTQAIE EEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH SFRETIPLEVQGLRAGNYTVNVNGVTGSFELTVDNILKETPDSMPPGQQVVTEAGNGTNI HHHHCCCEEEEEEECCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCHHHHEECCCCCEE NIE EEC >Mature Secondary Structure MKGRIDGKYIKSIRHVKTVRLTAVLFAFFIVALSGCVENVEDEKNNTTEIEYTYGMANVE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC SIDILIMESFPVQINVIAEGYLPDGCTRIDEIKTEREGETFNINITTKRPKDAICTQAIE EEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH SFRETIPLEVQGLRAGNYTVNVNGVTGSFELTVDNILKETPDSMPPGQQVVTEAGNGTNI HHHHCCCEEEEEEECCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCHHHHEECCCCCEE NIE EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1644308; 7607523 [H]