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The map label for this gene is mcrD [H]

Identifier: 21227345

GI number: 21227345

Start: 1471255

End: 1471767

Strand: Reverse

Name: mcrD [H]

Synonym: MM_1243

Alternate gene names: 21227345

Gene position: 1471767-1471255 (Counterclockwise)

Preceding gene: 21227346

Following gene: 21227344

Centisome position: 35.93

GC content: 44.25

Gene sequence:

>513_bases
ATGTCAGACTCTGCTTCAAACACAGAAAATTCCATTCAAATTGAAATCTTTCCCAGTAGAATTCTGTCCCCTGAGACTGC
TCAGAAACTACTCGTTGAGCTTTCTCAGGTTGATGGAATACTCCGTGTTATGATCCAGGGCAATAGACTTCCTGAAAAGG
TAGGTTATGGTCCTGGCACCGGGGAAAAGGTTGAACATCCTCTGAGAAAGCCTATTCAGATCGGAGGTCAGGTTATTGAG
CTCAGGGTTAGTGTAGGCAGGATCAGGCTTGAGGTCTTAAATGCCGAAGTCAAGGAAAATGTCAGGGCAGTATGCGAAAA
AATGCTCCCGTTCTCTTTTGAATTCAGGGAAGGGCATTTCCTCAGGAGAAAGCCTACAGTAACTGACTACGCTAAACTTG
GTCCTGAAGCTGATCCACGCTTGCTTGGTATGGTAGATCCCAAAGCCAAAATAAACCAGCTTGTCTTCATTGAGAAACAA
GAGAAAGAAGACGATGAAGATAAAGATGAGTGA

Upstream 100 bases:

>100_bases
TGGCCTCATTGGCGACGTGTTCGGATCGATCGATGAATTCCGCCAGCCAATTAAGGCAGTTGCAGGAGCGCTCTAAACAA
ATTAGTTAAAAGGTCTAAAG

Downstream 100 bases:

>100_bases
AAAGATATGATGTTTGACCGGGAAACACAGGTGGTTGATTGCCGATGCGGTGGAGGACTTGGCAAAGGAGGAGGACTTGC
TCAAAGAGGCACTCTTTCGG

Product: methyl-coenzyme M reductase operon protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSDSASNTENSIQIEIFPSRILSPETAQKLLVELSQVDGILRVMIQGNRLPEKVGYGPGTGEKVEHPLRKPIQIGGQVIE
LRVSVGRIRLEVLNAEVKENVRAVCEKMLPFSFEFREGHFLRRKPTVTDYAKLGPEADPRLLGMVDPKAKINQLVFIEKQ
EKEDDEDKDE

Sequences:

>Translated_170_residues
MSDSASNTENSIQIEIFPSRILSPETAQKLLVELSQVDGILRVMIQGNRLPEKVGYGPGTGEKVEHPLRKPIQIGGQVIE
LRVSVGRIRLEVLNAEVKENVRAVCEKMLPFSFEFREGHFLRRKPTVTDYAKLGPEADPRLLGMVDPKAKINQLVFIEKQ
EKEDDEDKDE
>Mature_169_residues
SDSASNTENSIQIEIFPSRILSPETAQKLLVELSQVDGILRVMIQGNRLPEKVGYGPGTGEKVEHPLRKPIQIGGQVIEL
RVSVGRIRLEVLNAEVKENVRAVCEKMLPFSFEFREGHFLRRKPTVTDYAKLGPEADPRLLGMVDPKAKINQLVFIEKQE
KEDDEDKDE

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003901
- ProDom:   PD005228 [H]

Pfam domain/function: PF02505 MCR_D [H]

EC number: NA

Molecular weight: Translated: 19193; Mature: 19062

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSASNTENSIQIEIFPSRILSPETAQKLLVELSQVDGILRVMIQGNRLPEKVGYGPGT
CCCCCCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
GEKVEHPLRKPIQIGGQVIELRVSVGRIRLEVLNAEVKENVRAVCEKMLPFSFEFREGHF
CHHHHHHHHHHHHHCCEEEEEEEEHHHEEHHHHHHHHHHHHHHHHHHHCCCEEECCCCCE
LRRKPTVTDYAKLGPEADPRLLGMVDPKAKINQLVFIEKQEKEDDEDKDE
ECCCCCCHHHHHCCCCCCCCEEEEECCHHHHCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SDSASNTENSIQIEIFPSRILSPETAQKLLVELSQVDGILRVMIQGNRLPEKVGYGPGT
CCCCCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
GEKVEHPLRKPIQIGGQVIELRVSVGRIRLEVLNAEVKENVRAVCEKMLPFSFEFREGHF
CHHHHHHHHHHHHHCCEEEEEEEEHHHEEHHHHHHHHHHHHHHHHHHHCCCEEECCCCCE
LRRKPTVTDYAKLGPEADPRLLGMVDPKAKINQLVFIEKQEKEDDEDKDE
ECCCCCCHHHHHCCCCCCCCEEEEECCHHHHCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3502709 [H]