| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is ywjB [H]
Identifier: 21227336
GI number: 21227336
Start: 1461438
End: 1461824
Strand: Direct
Name: ywjB [H]
Synonym: MM_1234
Alternate gene names: 21227336
Gene position: 1461438-1461824 (Clockwise)
Preceding gene: 21227333
Following gene: 21227337
Centisome position: 35.68
GC content: 44.44
Gene sequence:
>387_bases ATGGGCAGAAAGACCTATGAGCAGGTCCTGGGTTTTGGAGACTGGCCTTATGCGGACAAGAAAACTTATGTTTTTACAGG GCAAAAAGAGCCTCTGCTCCGGGAGAAAAACGTAGAATTTGTTTCCGGGAATGTCAGAGAGTTCACGCGCCAGCTGAAAG AGAATACTGACAAGGATATCTGGCTTGTGGGTGGCTCACAGCTTATTAAGGCGTTTCTCGAAGAAGACCTGGTGGATGAT ATGATCGTTTTTATTGTTCCGATCATTCTTGGAGGAGGAATTCCGCTTTTTGATCGGATTGGAAAAGAGATTAAACTCAA GATGACCAATACGGAGAGATATGAAAGCGGGCTTTTGAGAACGGAATATAACCTGAAGCCGACATAA
Upstream 100 bases:
>100_bases CAGAGAAGACGGCAGCATAGACTGGTTAACAGAATACGACAACAATTCCGAAACCGATTACGGCTACTCCGAATTTTACG CATCAGTCGGTACAGTTCTC
Downstream 100 bases:
>100_bases AGAAAAAATAGCAAATCATAAAAAGAAGGTCACTCAAAGTTCTTAGTAGAATTAATCAGGCTTTCGAGTGATTTAATGGC AATTCCAGATTATCAGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MGRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDIWLVGGSQLIKAFLEEDLVDD MIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLRTEYNLKPT
Sequences:
>Translated_128_residues MGRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDIWLVGGSQLIKAFLEEDLVDD MIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLRTEYNLKPT >Mature_127_residues GRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDIWLVGGSQLIKAFLEEDLVDDM IVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLRTEYNLKPT
Specific function: Unknown
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yyaP [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002734 [H]
Pfam domain/function: PF01872 RibD_C [H]
EC number: NA
Molecular weight: Translated: 14793; Mature: 14662
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDI CCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCE WLVGGSQLIKAFLEEDLVDDMIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLR EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEECCCHHHHCCCEE TEYNLKPT ECCCCCCC >Mature Secondary Structure GRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDI CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCE WLVGGSQLIKAFLEEDLVDDMIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLR EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEECCCHHHHCCCEE TEYNLKPT ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]