| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is mmr [H]
Identifier: 21227337
GI number: 21227337
Start: 1461900
End: 1462820
Strand: Direct
Name: mmr [H]
Synonym: MM_1235
Alternate gene names: 21227337
Gene position: 1461900-1462820 (Clockwise)
Preceding gene: 21227336
Following gene: 21227338
Centisome position: 35.69
GC content: 41.15
Gene sequence:
>921_bases ATGGCAATTCCAGATTATCAGGCTGTAATGCTCCCTTTGTTGAAATATGCAGGAGACGGTAAAGAGCACCACATTCGCGA TGCAATAGAAAAACTGGCCGAAGAATTCGAGCTGAGTGAAGAGGAAAGAAAAGAACTTCTACCGAGTGGTCAACAGGCTA TTTTTAAGAACAGAATAGGATGGGCTAATACTTATCTGAAAAAGGCTGGACTACTGGGTTCCAGAAAAAAAGGATATTTT TCCATTACCCGGAGAGGACTGGATGTTCTCAGAGAAAAACCTCCTTCCATTGATGTCAGTTTTCTGAAGAGATACAAGGA ATTTAATGAATTTTACAATAAGGACAAACAGGTTTTAATTGACAAGCCAGATGTTCCCGAAGCGGAAGGAAAAAGAGCTC TCGACCCCGAAGAATCTCTCGAAATCGCATATCAGAAACTTCACAACGAACTTGTTTCCGAAATAATTTCTACTACTAAA AAATGCTCTCCTGCTTTCTTTGAATCACTGGTTGTTGACGTTCTGACAAAAATGGGATATGGGGGTTCAAGAGTCGATGC CGGAAAAGCGATTGGCAAAAGCCATGACGGCGGCATTGATGGCATCATAAAAGAAGACAGGCTAGGGCTCGATGTAATTT ATATACAGGCGAAGCGCTGGGAAGGTACGGTATCAAAACCTGAAATCCAGAAGTTTGCCGGAGCTCTTATAGGTAAGAAG GCTAAGAAAGGCGTTTTCATAACGACCTCAAGCTTTTCAAAAGAGGCTATTGAATATGCCGACTTTACAGGAAATATTGT CCTGGTTGACGGGGAAATGCTTGCACGGCTAATGATTGAGTATAACGTTGGGGTTTCGAGGGTAAAATCATATGAAGTCA AAAAGATGGATACAGATTATTTTGAAGATGGAGTAATCTAA
Upstream 100 bases:
>100_bases GGAATATAACCTGAAGCCGACATAAAGAAAAAATAGCAAATCATAAAAAGAAGGTCACTCAAAGTTCTTAGTAGAATTAA TCAGGCTTTCGAGTGATTTA
Downstream 100 bases:
>100_bases AAAATTTCTTTCAACAAATAATATATACCTGAAGTCCCCATATAATGGTTTGAAATCAAACCAATATTGCATACAAAAGC ATACAAAATATAAATATATC
Product: 5-methylcytosine-specific restriction enzyme
Products: NA
Alternate protein names: EcoKMrr [H]
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MAIPDYQAVMLPLLKYAGDGKEHHIRDAIEKLAEEFELSEEERKELLPSGQQAIFKNRIGWANTYLKKAGLLGSRKKGYF SITRRGLDVLREKPPSIDVSFLKRYKEFNEFYNKDKQVLIDKPDVPEAEGKRALDPEESLEIAYQKLHNELVSEIISTTK KCSPAFFESLVVDVLTKMGYGGSRVDAGKAIGKSHDGGIDGIIKEDRLGLDVIYIQAKRWEGTVSKPEIQKFAGALIGKK AKKGVFITTSSFSKEAIEYADFTGNIVLVDGEMLARLMIEYNVGVSRVKSYEVKKMDTDYFEDGVI
Sequences:
>Translated_306_residues MAIPDYQAVMLPLLKYAGDGKEHHIRDAIEKLAEEFELSEEERKELLPSGQQAIFKNRIGWANTYLKKAGLLGSRKKGYF SITRRGLDVLREKPPSIDVSFLKRYKEFNEFYNKDKQVLIDKPDVPEAEGKRALDPEESLEIAYQKLHNELVSEIISTTK KCSPAFFESLVVDVLTKMGYGGSRVDAGKAIGKSHDGGIDGIIKEDRLGLDVIYIQAKRWEGTVSKPEIQKFAGALIGKK AKKGVFITTSSFSKEAIEYADFTGNIVLVDGEMLARLMIEYNVGVSRVKSYEVKKMDTDYFEDGVI >Mature_305_residues AIPDYQAVMLPLLKYAGDGKEHHIRDAIEKLAEEFELSEEERKELLPSGQQAIFKNRIGWANTYLKKAGLLGSRKKGYFS ITRRGLDVLREKPPSIDVSFLKRYKEFNEFYNKDKQVLIDKPDVPEAEGKRALDPEESLEIAYQKLHNELVSEIISTTKK CSPAFFESLVVDVLTKMGYGGSRVDAGKAIGKSHDGGIDGIIKEDRLGLDVIYIQAKRWEGTVSKPEIQKFAGALIGKKA KKGVFITTSSFSKEAIEYADFTGNIVLVDGEMLARLMIEYNVGVSRVKSYEVKKMDTDYFEDGVI
Specific function: Involved in the acceptance of foreign DNA which is modified. Restricts both adenine- and cytosine-methylated DNA [H]
COG id: COG1715
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790811, Length=307, Percent_Identity=40.0651465798046, Blast_Score=194, Evalue=4e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011856 - InterPro: IPR011335 - InterPro: IPR007560 [H]
Pfam domain/function: PF04471 Mrr_cat [H]
EC number: NA
Molecular weight: Translated: 34404; Mature: 34273
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIPDYQAVMLPLLKYAGDGKEHHIRDAIEKLAEEFELSEEERKELLPSGQQAIFKNRIG CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHCCC WANTYLKKAGLLGSRKKGYFSITRRGLDVLREKPPSIDVSFLKRYKEFNEFYNKDKQVLI HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEE DKPDVPEAEGKRALDPEESLEIAYQKLHNELVSEIISTTKKCSPAFFESLVVDVLTKMGY CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC GGSRVDAGKAIGKSHDGGIDGIIKEDRLGLDVIYIQAKRWEGTVSKPEIQKFAGALIGKK CCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHH AKKGVFITTSSFSKEAIEYADFTGNIVLVDGEMLARLMIEYNVGVSRVKSYEVKKMDTDY CCCCEEEEECCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH FEDGVI HCCCCC >Mature Secondary Structure AIPDYQAVMLPLLKYAGDGKEHHIRDAIEKLAEEFELSEEERKELLPSGQQAIFKNRIG CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHCCC WANTYLKKAGLLGSRKKGYFSITRRGLDVLREKPPSIDVSFLKRYKEFNEFYNKDKQVLI HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEE DKPDVPEAEGKRALDPEESLEIAYQKLHNELVSEIISTTKKCSPAFFESLVVDVLTKMGY CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC GGSRVDAGKAIGKSHDGGIDGIIKEDRLGLDVIYIQAKRWEGTVSKPEIQKFAGALIGKK CCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHH AKKGVFITTSSFSKEAIEYADFTGNIVLVDGEMLARLMIEYNVGVSRVKSYEVKKMDTDY CCCCEEEEECCCCHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH FEDGVI HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1650347; 7610040; 9278503 [H]