| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is tuaD [H]
Identifier: 21227234
GI number: 21227234
Start: 1335013
End: 1336266
Strand: Direct
Name: tuaD [H]
Synonym: MM_1132
Alternate gene names: 21227234
Gene position: 1335013-1336266 (Clockwise)
Preceding gene: 21227226
Following gene: 21227236
Centisome position: 32.59
GC content: 42.58
Gene sequence:
>1254_bases GTGGGTTCGGTCACCGCTGCTTGCTTTGCAGAAGTCGGGCACGAAGTTATCTGCGTAGATATTGACAGGAAAAAAACGGA GCAGATAAACGCAGGCATCCCTCCCATTTATGAAGAAGGACTTGGAGAGCTTTTGCAAAAATATGCAGGAAAAAAGCTCA TAGCAATTACTGATTATGAACTTGCGGTCAAAGAGACAGAGATCTCCTTTATCTGTGTAGGGACACCTTCTGCAGATGAC GGGACTATAGACCTTTCAATTGTCAGGGCAGCAGCAGCAAGTATAGGTAAAGCCCTTGCAAAAAAAGATGCTTATCATGT AGTGGTGGTAAAAAGTACAGTAGTTCCTGAAACTACAGAAAAATTCGTCCTCCCCATTCTTGAGGAAACATCAGGAAAGA AAGCCGGAAAAGACTTTGGTGTGGCAATGAATCCGGAGTTCCTGAGGGAAGGAAAGGCAGTCCAGGATTTTATGAACCCG GATAAAATAGTGGTCGGTGCAATTGACAAAAGATCAGGAAATCTTGTTTCCGAGCTTTATCGCACATTTGAATGTGAGGT CACGCGCACAGGCCCTGCAACTGCAGAAATGATAAAATATGCAAACAACTCCCTTCTTGCAACCAAGATTTCTTTTGCCA ATGAAATAGGAAATATTTGCAAAAAAATGGGGATAGATACATATGAGGTCATGGAAGCAGTTGGTAAAGACTTCAGAATT TCCCCGAAATTCCTGAACTCAGGGGCAGGTTTCGGAGGGTCCTGCTTCCCAAAGGACGTCAAAGCTCTTATAGGAAAAGC AAAAACAATAGGATACTCTCCAGTACTACTTGAGTCCGTAATAGCTGTAAATGAGAAACAGCCTCTTCTTATGACCGAAA TCCTGCAAAGAAAAATAGGAAACCCTGCGGACAAAAAGATTGCTGTTCTCGGACTTGCCTTCAAGAATGAAACTGACGAT ATAAGAGAATCCAGGTCAATTCCTGTAATTGCCGAACTTCTTAGACTTGGGGCAAAAGTTTCAGCTTATGACCCGATGGC AGCTGAAAACATGAAACGTATTTTCCCTTCAATCGAATACTGTGACAATGCCTCAGATGCGCTTAAAGATGCAGACGCCT GTCTTGTGATGACAGAGTGGGATGAGTTCAGAAACCTTGACTCCGAATTCCAGAACATGAAAGAAAAAATAATTATTGAT GGAAGGCGGATAATCAAAGCTAAAAATATTGATTATGAGGGGCTCTGCTGGTGA
Upstream 100 bases:
>100_bases ACAGGCTATCAAAAAATAAATAAGAATTGGGATCGATTACCTGTCAATTCCCGAAAAAGAGGTCAAGATTATGAAAGTTT CTGTTATAGGTTCAGGGTAT
Downstream 100 bases:
>100_bases AAACCAGCAGGGTCAACCCTTTCCATATACCAATATCATAGATTTATTGTTTTTATTTATTTTTAAGTATCCTTTGTCTG ATGCTTATTATATCCTGATT
Product: UDP-glucose 6-dehydrogenase
Products: NA
Alternate protein names: UDP-Glc dehydrogenase; UDP-GlcDH; UDPGDH; Teichuronic acid biosynthesis protein tuaD [H]
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MGSVTAACFAEVGHEVICVDIDRKKTEQINAGIPPIYEEGLGELLQKYAGKKLIAITDYELAVKETEISFICVGTPSADD GTIDLSIVRAAAASIGKALAKKDAYHVVVVKSTVVPETTEKFVLPILEETSGKKAGKDFGVAMNPEFLREGKAVQDFMNP DKIVVGAIDKRSGNLVSELYRTFECEVTRTGPATAEMIKYANNSLLATKISFANEIGNICKKMGIDTYEVMEAVGKDFRI SPKFLNSGAGFGGSCFPKDVKALIGKAKTIGYSPVLLESVIAVNEKQPLLMTEILQRKIGNPADKKIAVLGLAFKNETDD IRESRSIPVIAELLRLGAKVSAYDPMAAENMKRIFPSIEYCDNASDALKDADACLVMTEWDEFRNLDSEFQNMKEKIIID GRRIIKAKNIDYEGLCW
Sequences:
>Translated_417_residues MGSVTAACFAEVGHEVICVDIDRKKTEQINAGIPPIYEEGLGELLQKYAGKKLIAITDYELAVKETEISFICVGTPSADD GTIDLSIVRAAAASIGKALAKKDAYHVVVVKSTVVPETTEKFVLPILEETSGKKAGKDFGVAMNPEFLREGKAVQDFMNP DKIVVGAIDKRSGNLVSELYRTFECEVTRTGPATAEMIKYANNSLLATKISFANEIGNICKKMGIDTYEVMEAVGKDFRI SPKFLNSGAGFGGSCFPKDVKALIGKAKTIGYSPVLLESVIAVNEKQPLLMTEILQRKIGNPADKKIAVLGLAFKNETDD IRESRSIPVIAELLRLGAKVSAYDPMAAENMKRIFPSIEYCDNASDALKDADACLVMTEWDEFRNLDSEFQNMKEKIIID GRRIIKAKNIDYEGLCW >Mature_416_residues GSVTAACFAEVGHEVICVDIDRKKTEQINAGIPPIYEEGLGELLQKYAGKKLIAITDYELAVKETEISFICVGTPSADDG TIDLSIVRAAAASIGKALAKKDAYHVVVVKSTVVPETTEKFVLPILEETSGKKAGKDFGVAMNPEFLREGKAVQDFMNPD KIVVGAIDKRSGNLVSELYRTFECEVTRTGPATAEMIKYANNSLLATKISFANEIGNICKKMGIDTYEVMEAVGKDFRIS PKFLNSGAGFGGSCFPKDVKALIGKAKTIGYSPVLLESVIAVNEKQPLLMTEILQRKIGNPADKKIAVLGLAFKNETDDI RESRSIPVIAELLRLGAKVSAYDPMAAENMKRIFPSIEYCDNASDALKDADACLVMTEWDEFRNLDSEFQNMKEKIIIDG RRIIKAKNIDYEGLCW
Specific function: Catalyzes the conversion of UDP-glucose into UDP- glucuronate, one of the precursors of teichuronic acid [H]
COG id: COG1004
COG function: function code M; Predicted UDP-glucose 6-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDP-glucose/GDP-mannose dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4507813, Length=437, Percent_Identity=33.4096109839817, Blast_Score=197, Evalue=1e-50, Organism=Homo sapiens, GI296040438, Length=347, Percent_Identity=34.0057636887608, Blast_Score=161, Evalue=1e-39, Organism=Homo sapiens, GI296040443, Length=290, Percent_Identity=35.8620689655172, Blast_Score=155, Evalue=9e-38, Organism=Escherichia coli, GI48994968, Length=427, Percent_Identity=27.4004683840749, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1788340, Length=342, Percent_Identity=25.4385964912281, Blast_Score=115, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17560350, Length=443, Percent_Identity=33.4085778781038, Blast_Score=201, Evalue=7e-52, Organism=Drosophila melanogaster, GI17136908, Length=431, Percent_Identity=32.4825986078886, Blast_Score=204, Evalue=1e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR021157 - InterPro: IPR016040 - InterPro: IPR017476 - InterPro: IPR014027 - InterPro: IPR014026 - InterPro: IPR014028 - InterPro: IPR001732 [H]
Pfam domain/function: PF00984 UDPG_MGDP_dh; PF03720 UDPG_MGDP_dh_C; PF03721 UDPG_MGDP_dh_N [H]
EC number: =1.1.1.22 [H]
Molecular weight: Translated: 45605; Mature: 45474
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVTAACFAEVGHEVICVDIDRKKTEQINAGIPPIYEEGLGELLQKYAGKKLIAITDYE CCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCE LAVKETEISFICVGTPSADDGTIDLSIVRAAAASIGKALAKKDAYHVVVVKSTVVPETTE EEEEECCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH KFVLPILEETSGKKAGKDFGVAMNPEFLREGKAVQDFMNPDKIVVGAIDKRSGNLVSELY HHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCEEEEEECCCCCCHHHHHHH RTFECEVTRTGPATAEMIKYANNSLLATKISFANEIGNICKKMGIDTYEVMEAVGKDFRI HHHEEEEECCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC SPKFLNSGAGFGGSCFPKDVKALIGKAKTIGYSPVLLESVIAVNEKQPLLMTEILQRKIG CHHHHCCCCCCCCCCCHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC NPADKKIAVLGLAFKNETDDIRESRSIPVIAELLRLGAKVSAYDPMAAENMKRIFPSIEY CCCCCEEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHH CDNASDALKDADACLVMTEWDEFRNLDSEFQNMKEKIIIDGRRIIKAKNIDYEGLCW CCCCHHHHHCCCEEEEEECCHHHHCHHHHHHHHHHHEEECCCEEEEECCCCCCCCCC >Mature Secondary Structure GSVTAACFAEVGHEVICVDIDRKKTEQINAGIPPIYEEGLGELLQKYAGKKLIAITDYE CCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCE LAVKETEISFICVGTPSADDGTIDLSIVRAAAASIGKALAKKDAYHVVVVKSTVVPETTE EEEEECCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH KFVLPILEETSGKKAGKDFGVAMNPEFLREGKAVQDFMNPDKIVVGAIDKRSGNLVSELY HHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCEEEEEECCCCCCHHHHHHH RTFECEVTRTGPATAEMIKYANNSLLATKISFANEIGNICKKMGIDTYEVMEAVGKDFRI HHHEEEEECCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC SPKFLNSGAGFGGSCFPKDVKALIGKAKTIGYSPVLLESVIAVNEKQPLLMTEILQRKIG CHHHHCCCCCCCCCCCHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC NPADKKIAVLGLAFKNETDDIRESRSIPVIAELLRLGAKVSAYDPMAAENMKRIFPSIEY CCCCCEEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHH CDNASDALKDADACLVMTEWDEFRNLDSEFQNMKEKIIIDGRRIIKAKNIDYEGLCW CCCCHHHHHCCCEEEEEECCHHHHCHHHHHHHHHHHEEECCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10048024; 9384377; 10376820 [H]