| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227223
Identifier: 21227223
GI number: 21227223
Start: 1320397
End: 1321992
Strand: Reverse
Name: 21227223
Synonym: MM_1121
Alternate gene names: NA
Gene position: 1321992-1320397 (Counterclockwise)
Preceding gene: 21227227
Following gene: 21227219
Centisome position: 32.27
GC content: 45.99
Gene sequence:
>1596_bases TTGTATTCAGCCCTTACACTTTGTTTCAATTCTTTAATTTCCGATCCTGTTAGTATAGTTTCATCGCCATCTCAACTTTC CGATAGGCCTCTAAGACATGAGTTTACGGTCCTGATTCCAGCCCAAAATGAGGAGGCTTCCATCGGTAGCAAGGTTCTGC TTGCGGCGAGTTATGCAGATCGTGTACTTGTGCTTGACAAAGGGTCTACTGACAGAACCATGGAAGTGGCAGCTCTGGGT GGGGCAAGAGTTATTCCTCTTGCAGGAGGGGAGGAAGCTTTGCTTAAAGTCCTCTACAGGGCGTCACTTGATTCTGAGCT TGTGGTTCTCATCTATCCGGAGTGCATGCAGGATATAGATTTGCTTTCCCATGTCCTTGAGCCTTTAAGGCAGGGGTTTG ACCTGTCAGTAGGTTCCTGGCCCTGCCGTGTTTCCTGTGAACAGGAAGCTGTGATGCTTCTTAACGGGAAAAGCACCTTT AAAGAAAAAATAGGCTTTCTTGCCGTAACCTCAAGGTCACTTCAGAATATAAGTTCAGGCAAAGAGCACATGTCTTTAAA GTCCCTGCTTTCTGCGGCAAAGACTGAAAAACTTAAGGTTAACTATCTGAGCTTTGATGTCGATCCAGCATTTCGGAAGC TTGAGAGTACCCGCATAGGAGTTGTTGTTCCTGCATACAACGAAGAACTGCTTATCGGTGAGACTCTCAGCGGAATTCCA GAGTATGTGGACCGTATATATGTGATTGATGATGGAAGCACTGACCGGACAGGAGAAATAGTCAAAAAGTTCGGAGACTC GAGAATAGTTTATCTGCGTCACGAGGTAAATAGGGGCGTCGGGGCAGGGATAATTAGCGGGTATAAACTCGCTCTGAAAG ATGAAATGGATATTGTAGCAGTTATGGCTGGGGATAACCAGATGGATCCTGCCCATCTTCCGAGATTGATCTTTCCGATT ATCGAAGGACTTGCCGACTATACAAAGGGCAACAGGCTTCTTTCAGACAATTTTATGACCGGGATGAGCAGGTTGAGGTC TTTTGGAAACCTTCTTCTGAGCTTCCTGACCAAAATAGGAAGTGGATACTGGCACATAATGGACCCACAAAATGGGTACA CAGCCATTTCCAGGCAGGCTCTTGAAGTTATCGATCTGGATGCAGTCTATCCTTATTACGGGTACTGTAACGACCTGCTG ATCAAGCTTAATGCCTTTGGAATGAGGGTAATGGATGTGGTCATTCCTGCCCGTTATGGAAGAGAGAAGTCATCTATAAA ATATAGCAAATATGTCCGTAAGGTCTCACCCATGCTTTTCAGGGGTTTCCTCTGGAGGCTCAGGGTCAAATACACTGTCC TGGATTTCCATCCCCTTGTGCTATTTTACTTCCTCGGGATGCTCGCATTACCTCTGAGTGTCCTCCTGGCTTTCTGGGGA ATTTTCCAGCTATTGCTTCAAAACACTCTTCCGTCATATTACCCACTGCTTGGCTTCCTCGTACTGGGTACAGGGCTCCA GATGCTCCTTTTCGGAATGCTCTTTGACATGCAGGTAGAGAAGAAAAGAAATGAAAGAGTAGGACTTGCTCGTTAA
Upstream 100 bases:
>100_bases ATTCCAAATATCTTTCAAATGATAGCCTTTAATATTTTTGCATTTATACACATACTGGGGGTTATAGTATAATGCATACT CATAAGGGGGTGGAGAGGGT
Downstream 100 bases:
>100_bases GGTCTGGAATTTATCTCCCAGATCTTTTTCTATTTATTTTAATCATCATTAAGAGCCTGAATATCTATTGATTTTTCTAC ATATCTTTGTCCGCTTGTTA
Product: glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MYSALTLCFNSLISDPVSIVSSPSQLSDRPLRHEFTVLIPAQNEEASIGSKVLLAASYADRVLVLDKGSTDRTMEVAALG GARVIPLAGGEEALLKVLYRASLDSELVVLIYPECMQDIDLLSHVLEPLRQGFDLSVGSWPCRVSCEQEAVMLLNGKSTF KEKIGFLAVTSRSLQNISSGKEHMSLKSLLSAAKTEKLKVNYLSFDVDPAFRKLESTRIGVVVPAYNEELLIGETLSGIP EYVDRIYVIDDGSTDRTGEIVKKFGDSRIVYLRHEVNRGVGAGIISGYKLALKDEMDIVAVMAGDNQMDPAHLPRLIFPI IEGLADYTKGNRLLSDNFMTGMSRLRSFGNLLLSFLTKIGSGYWHIMDPQNGYTAISRQALEVIDLDAVYPYYGYCNDLL IKLNAFGMRVMDVVIPARYGREKSSIKYSKYVRKVSPMLFRGFLWRLRVKYTVLDFHPLVLFYFLGMLALPLSVLLAFWG IFQLLLQNTLPSYYPLLGFLVLGTGLQMLLFGMLFDMQVEKKRNERVGLAR
Sequences:
>Translated_531_residues MYSALTLCFNSLISDPVSIVSSPSQLSDRPLRHEFTVLIPAQNEEASIGSKVLLAASYADRVLVLDKGSTDRTMEVAALG GARVIPLAGGEEALLKVLYRASLDSELVVLIYPECMQDIDLLSHVLEPLRQGFDLSVGSWPCRVSCEQEAVMLLNGKSTF KEKIGFLAVTSRSLQNISSGKEHMSLKSLLSAAKTEKLKVNYLSFDVDPAFRKLESTRIGVVVPAYNEELLIGETLSGIP EYVDRIYVIDDGSTDRTGEIVKKFGDSRIVYLRHEVNRGVGAGIISGYKLALKDEMDIVAVMAGDNQMDPAHLPRLIFPI IEGLADYTKGNRLLSDNFMTGMSRLRSFGNLLLSFLTKIGSGYWHIMDPQNGYTAISRQALEVIDLDAVYPYYGYCNDLL IKLNAFGMRVMDVVIPARYGREKSSIKYSKYVRKVSPMLFRGFLWRLRVKYTVLDFHPLVLFYFLGMLALPLSVLLAFWG IFQLLLQNTLPSYYPLLGFLVLGTGLQMLLFGMLFDMQVEKKRNERVGLAR >Mature_531_residues MYSALTLCFNSLISDPVSIVSSPSQLSDRPLRHEFTVLIPAQNEEASIGSKVLLAASYADRVLVLDKGSTDRTMEVAALG GARVIPLAGGEEALLKVLYRASLDSELVVLIYPECMQDIDLLSHVLEPLRQGFDLSVGSWPCRVSCEQEAVMLLNGKSTF KEKIGFLAVTSRSLQNISSGKEHMSLKSLLSAAKTEKLKVNYLSFDVDPAFRKLESTRIGVVVPAYNEELLIGETLSGIP EYVDRIYVIDDGSTDRTGEIVKKFGDSRIVYLRHEVNRGVGAGIISGYKLALKDEMDIVAVMAGDNQMDPAHLPRLIFPI IEGLADYTKGNRLLSDNFMTGMSRLRSFGNLLLSFLTKIGSGYWHIMDPQNGYTAISRQALEVIDLDAVYPYYGYCNDLL IKLNAFGMRVMDVVIPARYGREKSSIKYSKYVRKVSPMLFRGFLWRLRVKYTVLDFHPLVLFYFLGMLALPLSVLLAFWG IFQLLLQNTLPSYYPLLGFLVLGTGLQMLLFGMLFDMQVEKKRNERVGLAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 59333; Mature: 59333
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSALTLCFNSLISDPVSIVSSPSQLSDRPLRHEFTVLIPAQNEEASIGSKVLLAASYAD CCHHHHHHHHHHHCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCC RVLVLDKGSTDRTMEVAALGGARVIPLAGGEEALLKVLYRASLDSELVVLIYPECMQDID EEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHH LLSHVLEPLRQGFDLSVGSWPCRVSCEQEAVMLLNGKSTFKEKIGFLAVTSRSLQNISSG HHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHCCCEEEHHHHHHHHCC KEHMSLKSLLSAAKTEKLKVNYLSFDVDPAFRKLESTRIGVVVPAYNEELLIGETLSGIP HHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHCCCEEEEEEECCCCCEEECCHHHHHH EYVDRIYVIDDGSTDRTGEIVKKFGDSRIVYLRHEVNRGVGAGIISGYKLALKDEMDIVA HHHCEEEEEECCCCCCHHHHHHHCCCCEEEEEEEHHCCCCCCHHHCCEEEEEECCCCEEE VMAGDNQMDPAHLPRLIFPIIEGLADYTKGNRLLSDNFMTGMSRLRSFGNLLLSFLTKIG EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHC SGYWHIMDPQNGYTAISRQALEVIDLDAVYPYYGYCNDLLIKLNAFGMRVMDVVIPARYG CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHCC REKSSIKYSKYVRKVSPMLFRGFLWRLRVKYTVLDFHPLVLFYFLGMLALPLSVLLAFWG CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH IFQLLLQNTLPSYYPLLGFLVLGTGLQMLLFGMLFDMQVEKKRNERVGLAR HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MYSALTLCFNSLISDPVSIVSSPSQLSDRPLRHEFTVLIPAQNEEASIGSKVLLAASYAD CCHHHHHHHHHHHCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCC RVLVLDKGSTDRTMEVAALGGARVIPLAGGEEALLKVLYRASLDSELVVLIYPECMQDID EEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHH LLSHVLEPLRQGFDLSVGSWPCRVSCEQEAVMLLNGKSTFKEKIGFLAVTSRSLQNISSG HHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHCCCEEEHHHHHHHHCC KEHMSLKSLLSAAKTEKLKVNYLSFDVDPAFRKLESTRIGVVVPAYNEELLIGETLSGIP HHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHCCCEEEEEEECCCCCEEECCHHHHHH EYVDRIYVIDDGSTDRTGEIVKKFGDSRIVYLRHEVNRGVGAGIISGYKLALKDEMDIVA HHHCEEEEEECCCCCCHHHHHHHCCCCEEEEEEEHHCCCCCCHHHCCEEEEEECCCCEEE VMAGDNQMDPAHLPRLIFPIIEGLADYTKGNRLLSDNFMTGMSRLRSFGNLLLSFLTKIG EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHC SGYWHIMDPQNGYTAISRQALEVIDLDAVYPYYGYCNDLLIKLNAFGMRVMDVVIPARYG CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHCC REKSSIKYSKYVRKVSPMLFRGFLWRLRVKYTVLDFHPLVLFYFLGMLALPLSVLLAFWG CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH IFQLLLQNTLPSYYPLLGFLVLGTGLQMLLFGMLFDMQVEKKRNERVGLAR HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]