| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yegE [C]
Identifier: 21227195
GI number: 21227195
Start: 1285023
End: 1287518
Strand: Direct
Name: yegE [C]
Synonym: MM_1093
Alternate gene names: 21227195
Gene position: 1285023-1287518 (Clockwise)
Preceding gene: 21227194
Following gene: 21227196
Centisome position: 31.37
GC content: 41.87
Gene sequence:
>2496_bases ATGCTAAAAATGCAATTTTTGGGGAAGGGCGTTGTAAATATGAGTTCAAAATTGGCGAAAGACCAGGGAAACGTGCCATA TCAGAAGCTGTTAGATAAAAATCATGCCCTGGAAGCAGAGTTACAGGATCTAAAAATGCGGCTGGAAGAGGCTGAAGAAC TCAGGCGTGCCATCAGTGAGGGGGATCTGGATGCTCTGATTATACCTGGACCTCAAGAAAAATTGATTTTCACCCTGGAT AGTGCCGACCGTGCATATCGTGTTCTTGTGGAGGCAATGAATGAGGGTACTGCCACCCTTGCCTCCGACGGTACTATTCT TTACTGCAATCGCCAATTTGCAGAACTCACAAAGATGTCATCCGGGGCTGTAGTAGGTACGTCTATTTATGGATTTATTG CGCCAGAAGATGCTATTACCTTTAAGGCACTCCTGAAACAGAAAAACAGTGTAGGGGAGTTGAAATTTAGGGCTCAGGGT GGTACGTCTGTACCAGTATACCTGTCTATCAGTTCATTGCAGTCCGAGGGATCACCAAGTGCATGGTGCCTTGTGGTTAC AGACCTGACTGAGCAGAAGAAGAATGAAGAAATAGTTGCTGCTGAACGTCTGGCCCGGTCAATTATAGAACAGGCTGCCG AAGCCATAGTAGTCTGCGACACGACTGGAAGGATCACATATTTCAGCAACACAGTGTCCAAGGTCTGTAAATGCGATCCG GCGTTCAAGAGATTTGAAGATATCATAGATATCCGGTTCTCAGAAGGAAAAGATGCAGGAAAAAGTATTCTTCCGGTCTC CTCTGCTCTGAAAGGAGATACCATCCTTGGATTGGAAGCAATCTTAGAATATAAAAGTTGCCAGAAGTTCAACCAGAAGC TCCATTTACTATTAAATTCAGGACCTCTCAGAAACTCCAATGGCAGGATAATAGGCTGTGTAGTAACTCTCACGGATATC ACTGAGCGCAAGAAAATGGAAAGGGAGCTTCAAGAGAGTGAGGAAAAATACCGAAATATCGTAGAGACAGCAAACGAAGG TATATGGATACTTGACCCTGAAGCCAGAATTACTTATGTTAATCAGAGAATGGCAGAGATGCTGGGATACAATCATGAAG AAATAATTGGAAGGTCTGCATGGGACTTTACCGGTGATGAAGGAAAAGAAGCTGCCAAGCAGAGTATGGAAAAAGGAAAG CAGCGTATTGATAGAGATCATGAATTAAAATTAATAAGCAAAAATGGTACGCCTCTATGGACAATTGTAAGTGCTAAAGC TCTTTTTGATAAAGATGGCAATTTTATGGGCTCTATGAAGATGCTTACAAACATTACCGAAAGAAAAGAAGCAGAAGTTA AACTAAAACAAACCCTCAACAATTTGGAAAAATTAGTTCAGGAACGCACGATAGAGCTTGAGAAGGCTTACGGCTCATTA AAAGAAAGCGAAAGAGGTCTTGCTGAGGCTCAAAAAATGGCACACATCGGAAACTGGGATCGGAGTCTTATAACTAATGA AGTTCACTGGTCTGATGAAGTTTATCGTATTTTTGGATTTAAGCCTAAGGAATTTGGAGTAACTTATAGCACATATTTAA ATTGTGTACATCCTGACGACCAAGACCGAGTAATTAAGGCAGCTAAACAGGCTTTAGAGGGAAAACTCTCCAGTATTGAT TACAGGATTGTCCTGAACAATGGGGAGGAGCGTGTAGTCCATGAGGAATTCAAAGTTGTCTTTGATGAGAAAAGTAATCC TGTCCAACTCAGAGGAACAGTTCAGGATATTACGGAGCGTAAAAAAGCTGAAGAAACCCTGGAAAAAATGGACAAAATCC GCATAAAAGAAATCCACCACAGAATCAAAAATAACCTGCAGGTTATATGTTCTCTTCTCAGTCTTGAAGCTGAAAGATTC AGTGACGAAAAGATGCTTGAAACTTTGAAAGAGAGCCAGAACCGTGTAGCTTCAATGGCTCTGATACACGAAGAGCTCTA CAAAGGAGATAAAAACGACACCCTTGACTTTGCAGCTTATCTCCGCAAACTCACTGCTGATCTATTCAGCTCATATAATC TAGGAAATGACAATATCAGCTTGAAAATGGATCTTGAGCAGGTATATCTGGATATGGATACAGCAATCCCTCTTGGTATC ATTGTAAATGAACTGTTTTCAAACTCCCTGAAGCATGCTTTCCCTGCTGGAAGCGAAGGCGAAGTCCATATAAGCCTGAG AAGAGCTGAGACTTTTGACAAAGGAAACAATGTATCAGACTCGGACCAGCACTGCAACGAAATAGATAATTTCCGATACA TACTCAGAGTGGCTGACAATGGAAAGGGCATATCAAAAGAAATAGAGATCGAAAATGCTGATTCTCTAGGGCTCCAGCTT GTAAATATCCTTGTTGACCAAATAGACGGCTGTGTAGAGCTCAGTAGAAATTGCGGGACAGAATTTACAATCTGGTTTGG GGATAAAGAGCCGTAA
Upstream 100 bases:
>100_bases TAAAAGAGCTCCCTCCACCATTAAGAAAGCTCATAGGCAGCATGTCAGATACCGAAAGGGTCCTTATGGGGATGGACCTG AAATCAAAAAAAGATAAAGA
Downstream 100 bases:
>100_bases GCTCTTCAATTTATGGCTGTCTATTCAAAACCCGTTTTCACTTAAATATCCACAAAAGTTCCATAACTACTTTTCCGATC AGTAGCTCGATTTATTACTT
Product: sensory transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 831; Mature: 831
Protein sequence:
>831_residues MLKMQFLGKGVVNMSSKLAKDQGNVPYQKLLDKNHALEAELQDLKMRLEEAEELRRAISEGDLDALIIPGPQEKLIFTLD SADRAYRVLVEAMNEGTATLASDGTILYCNRQFAELTKMSSGAVVGTSIYGFIAPEDAITFKALLKQKNSVGELKFRAQG GTSVPVYLSISSLQSEGSPSAWCLVVTDLTEQKKNEEIVAAERLARSIIEQAAEAIVVCDTTGRITYFSNTVSKVCKCDP AFKRFEDIIDIRFSEGKDAGKSILPVSSALKGDTILGLEAILEYKSCQKFNQKLHLLLNSGPLRNSNGRIIGCVVTLTDI TERKKMERELQESEEKYRNIVETANEGIWILDPEARITYVNQRMAEMLGYNHEEIIGRSAWDFTGDEGKEAAKQSMEKGK QRIDRDHELKLISKNGTPLWTIVSAKALFDKDGNFMGSMKMLTNITERKEAEVKLKQTLNNLEKLVQERTIELEKAYGSL KESERGLAEAQKMAHIGNWDRSLITNEVHWSDEVYRIFGFKPKEFGVTYSTYLNCVHPDDQDRVIKAAKQALEGKLSSID YRIVLNNGEERVVHEEFKVVFDEKSNPVQLRGTVQDITERKKAEETLEKMDKIRIKEIHHRIKNNLQVICSLLSLEAERF SDEKMLETLKESQNRVASMALIHEELYKGDKNDTLDFAAYLRKLTADLFSSYNLGNDNISLKMDLEQVYLDMDTAIPLGI IVNELFSNSLKHAFPAGSEGEVHISLRRAETFDKGNNVSDSDQHCNEIDNFRYILRVADNGKGISKEIEIENADSLGLQL VNILVDQIDGCVELSRNCGTEFTIWFGDKEP
Sequences:
>Translated_831_residues MLKMQFLGKGVVNMSSKLAKDQGNVPYQKLLDKNHALEAELQDLKMRLEEAEELRRAISEGDLDALIIPGPQEKLIFTLD SADRAYRVLVEAMNEGTATLASDGTILYCNRQFAELTKMSSGAVVGTSIYGFIAPEDAITFKALLKQKNSVGELKFRAQG GTSVPVYLSISSLQSEGSPSAWCLVVTDLTEQKKNEEIVAAERLARSIIEQAAEAIVVCDTTGRITYFSNTVSKVCKCDP AFKRFEDIIDIRFSEGKDAGKSILPVSSALKGDTILGLEAILEYKSCQKFNQKLHLLLNSGPLRNSNGRIIGCVVTLTDI TERKKMERELQESEEKYRNIVETANEGIWILDPEARITYVNQRMAEMLGYNHEEIIGRSAWDFTGDEGKEAAKQSMEKGK QRIDRDHELKLISKNGTPLWTIVSAKALFDKDGNFMGSMKMLTNITERKEAEVKLKQTLNNLEKLVQERTIELEKAYGSL KESERGLAEAQKMAHIGNWDRSLITNEVHWSDEVYRIFGFKPKEFGVTYSTYLNCVHPDDQDRVIKAAKQALEGKLSSID YRIVLNNGEERVVHEEFKVVFDEKSNPVQLRGTVQDITERKKAEETLEKMDKIRIKEIHHRIKNNLQVICSLLSLEAERF SDEKMLETLKESQNRVASMALIHEELYKGDKNDTLDFAAYLRKLTADLFSSYNLGNDNISLKMDLEQVYLDMDTAIPLGI IVNELFSNSLKHAFPAGSEGEVHISLRRAETFDKGNNVSDSDQHCNEIDNFRYILRVADNGKGISKEIEIENADSLGLQL VNILVDQIDGCVELSRNCGTEFTIWFGDKEP >Mature_831_residues MLKMQFLGKGVVNMSSKLAKDQGNVPYQKLLDKNHALEAELQDLKMRLEEAEELRRAISEGDLDALIIPGPQEKLIFTLD SADRAYRVLVEAMNEGTATLASDGTILYCNRQFAELTKMSSGAVVGTSIYGFIAPEDAITFKALLKQKNSVGELKFRAQG GTSVPVYLSISSLQSEGSPSAWCLVVTDLTEQKKNEEIVAAERLARSIIEQAAEAIVVCDTTGRITYFSNTVSKVCKCDP AFKRFEDIIDIRFSEGKDAGKSILPVSSALKGDTILGLEAILEYKSCQKFNQKLHLLLNSGPLRNSNGRIIGCVVTLTDI TERKKMERELQESEEKYRNIVETANEGIWILDPEARITYVNQRMAEMLGYNHEEIIGRSAWDFTGDEGKEAAKQSMEKGK QRIDRDHELKLISKNGTPLWTIVSAKALFDKDGNFMGSMKMLTNITERKEAEVKLKQTLNNLEKLVQERTIELEKAYGSL KESERGLAEAQKMAHIGNWDRSLITNEVHWSDEVYRIFGFKPKEFGVTYSTYLNCVHPDDQDRVIKAAKQALEGKLSSID YRIVLNNGEERVVHEEFKVVFDEKSNPVQLRGTVQDITERKKAEETLEKMDKIRIKEIHHRIKNNLQVICSLLSLEAERF SDEKMLETLKESQNRVASMALIHEELYKGDKNDTLDFAAYLRKLTADLFSSYNLGNDNISLKMDLEQVYLDMDTAIPLGI IVNELFSNSLKHAFPAGSEGEVHISLRRAETFDKGNNVSDSDQHCNEIDNFRYILRVADNGKGISKEIEIENADSLGLQL VNILVDQIDGCVELSRNCGTEFTIWFGDKEP
Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light. Once ejected from an infected animal host, sunlight acts as an environmental signal that increases the virulence of the bacterium, preparing it for infection o
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788381, Length=283, Percent_Identity=21.9081272084806, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR013655 - InterPro: IPR011102 [H]
Pfam domain/function: PF07536 HWE_HK; PF00989 PAS; PF08447 PAS_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93643; Mature: 93643
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKMQFLGKGVVNMSSKLAKDQGNVPYQKLLDKNHALEAELQDLKMRLEEAEELRRAISE CCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GDLDALIIPGPQEKLIFTLDSADRAYRVLVEAMNEGTATLASDGTILYCNRQFAELTKMS CCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHCC SGAVVGTSIYGFIAPEDAITFKALLKQKNSVGELKFRAQGGTSVPVYLSISSLQSEGSPS CCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEHHCCCCCCC AWCLVVTDLTEQKKNEEIVAAERLARSIIEQAAEAIVVCDTTGRITYFSNTVSKVCKCDP EEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEHHHHHHHHCCCH AFKRFEDIIDIRFSEGKDAGKSILPVSSALKGDTILGLEAILEYKSCQKFNQKLHLLLNS HHHHHHHHHHEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECC GPLRNSNGRIIGCVVTLTDITERKKMERELQESEEKYRNIVETANEGIWILDPEARITYV CCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHH NQRMAEMLGYNHEEIIGRSAWDFTGDEGKEAAKQSMEKGKQRIDRDHELKLISKNGTPLW HHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEE TIVSAKALFDKDGNFMGSMKMLTNITERKEAEVKLKQTLNNLEKLVQERTIELEKAYGSL EEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KESERGLAEAQKMAHIGNWDRSLITNEVHWSDEVYRIFGFKPKEFGVTYSTYLNCVHPDD HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCCCHHHCCCHHHHEEECCCCC QDRVIKAAKQALEGKLSSIDYRIVLNNGEERVVHEEFKVVFDEKSNPVQLRGTVQDITER HHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHEECCCCCCEEEEEHHHHHHHH KKAEETLEKMDKIRIKEIHHRIKNNLQVICSLLSLEAERFSDEKMLETLKESQNRVASMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LIHEELYKGDKNDTLDFAAYLRKLTADLFSSYNLGNDNISLKMDLEQVYLDMDTAIPLGI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHCCCCHHHH IVNELFSNSLKHAFPAGSEGEVHISLRRAETFDKGNNVSDSDQHCNEIDNFRYILRVADN HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCEEEEEEEECC GKGISKEIEIENADSLGLQLVNILVDQIDGCVELSRNCGTEFTIWFGDKEP CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC >Mature Secondary Structure MLKMQFLGKGVVNMSSKLAKDQGNVPYQKLLDKNHALEAELQDLKMRLEEAEELRRAISE CCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GDLDALIIPGPQEKLIFTLDSADRAYRVLVEAMNEGTATLASDGTILYCNRQFAELTKMS CCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHCC SGAVVGTSIYGFIAPEDAITFKALLKQKNSVGELKFRAQGGTSVPVYLSISSLQSEGSPS CCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEHHCCCCCCC AWCLVVTDLTEQKKNEEIVAAERLARSIIEQAAEAIVVCDTTGRITYFSNTVSKVCKCDP EEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEHHHHHHHHCCCH AFKRFEDIIDIRFSEGKDAGKSILPVSSALKGDTILGLEAILEYKSCQKFNQKLHLLLNS HHHHHHHHHHEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECC GPLRNSNGRIIGCVVTLTDITERKKMERELQESEEKYRNIVETANEGIWILDPEARITYV CCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHH NQRMAEMLGYNHEEIIGRSAWDFTGDEGKEAAKQSMEKGKQRIDRDHELKLISKNGTPLW HHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEE TIVSAKALFDKDGNFMGSMKMLTNITERKEAEVKLKQTLNNLEKLVQERTIELEKAYGSL EEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KESERGLAEAQKMAHIGNWDRSLITNEVHWSDEVYRIFGFKPKEFGVTYSTYLNCVHPDD HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCCCHHHCCCHHHHEEECCCCC QDRVIKAAKQALEGKLSSIDYRIVLNNGEERVVHEEFKVVFDEKSNPVQLRGTVQDITER HHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHEECCCCCCEEEEEHHHHHHHH KKAEETLEKMDKIRIKEIHHRIKNNLQVICSLLSLEAERFSDEKMLETLKESQNRVASMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LIHEELYKGDKNDTLDFAAYLRKLTADLFSSYNLGNDNISLKMDLEQVYLDMDTAIPLGI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHCCCCHHHH IVNELFSNSLKHAFPAGSEGEVHISLRRAETFDKGNNVSDSDQHCNEIDNFRYILRVADN HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCEEEEEEEECC GKGISKEIEIENADSLGLQLVNILVDQIDGCVELSRNCGTEFTIWFGDKEP CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA