| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227194
Identifier: 21227194
GI number: 21227194
Start: 1284655
End: 1285029
Strand: Direct
Name: 21227194
Synonym: MM_1092
Alternate gene names: NA
Gene position: 1284655-1285029 (Clockwise)
Preceding gene: 21227193
Following gene: 21227195
Centisome position: 31.36
GC content: 44.0
Gene sequence:
>375_bases ATGTCTGATACCGAAGAGGCCAGAAAGTCAGATGTTAAGGACTCAACAGCAGCCTTTGAAGAAGCCCTTGCCAAAGGAGA AGATAACAACATATATGTTCTGCGCCTCTATGTCGCAGGGATGGGGCCCAAATCAATACAGGCGATAAACAATATCAAGC ATATATTTGAAGAGTATGCGCCCGGCAAGTATGAGCTTGAGGTCATTGATATCTATCAGCATCCTGTCTTTGCCAGAGAT GAGCAGATAGTGGCAGCTCCTACTCTTATAAAAGAGCTCCCTCCACCATTAAGAAAGCTCATAGGCAGCATGTCAGATAC CGAAAGGGTCCTTATGGGGATGGACCTGAAATCAAAAAAAGATAAAGAATGCTAA
Upstream 100 bases:
>100_bases TTAGAAGACTCCCTCCACCAATAAAGAAAATTATAGGAGATCTCTCGAATACGGAGCGAGTCCTGGTAGGCCTGGATTTG CGTCCTGTGGAGTGATGCTA
Downstream 100 bases:
>100_bases AAATGCAATTTTTGGGGAAGGGCGTTGTAAATATGAGTTCAAAATTGGCGAAAGACCAGGGAAACGTGCCATATCAGAAG CTGTTAGATAAAAATCATGC
Product: thiol-disulfide isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MSDTEEARKSDVKDSTAAFEEALAKGEDNNIYVLRLYVAGMGPKSIQAINNIKHIFEEYAPGKYELEVIDIYQHPVFARD EQIVAAPTLIKELPPPLRKLIGSMSDTERVLMGMDLKSKKDKEC
Sequences:
>Translated_124_residues MSDTEEARKSDVKDSTAAFEEALAKGEDNNIYVLRLYVAGMGPKSIQAINNIKHIFEEYAPGKYELEVIDIYQHPVFARD EQIVAAPTLIKELPPPLRKLIGSMSDTERVLMGMDLKSKKDKEC >Mature_123_residues SDTEEARKSDVKDSTAAFEEALAKGEDNNIYVLRLYVAGMGPKSIQAINNIKHIFEEYAPGKYELEVIDIYQHPVFARDE QIVAAPTLIKELPPPLRKLIGSMSDTERVLMGMDLKSKKDKEC
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the kaiB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011649 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF07689 KaiB [H]
EC number: NA
Molecular weight: Translated: 13958; Mature: 13827
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTEEARKSDVKDSTAAFEEALAKGEDNNIYVLRLYVAGMGPKSIQAINNIKHIFEEYA CCCHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHC PGKYELEVIDIYQHPVFARDEQIVAAPTLIKELPPPLRKLIGSMSDTERVLMGMDLKSKK CCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHCCHHHHHHHCCCCCHHHHHHCCCCCCCC DKEC CCCC >Mature Secondary Structure SDTEEARKSDVKDSTAAFEEALAKGEDNNIYVLRLYVAGMGPKSIQAINNIKHIFEEYA CCHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHC PGKYELEVIDIYQHPVFARDEQIVAAPTLIKELPPPLRKLIGSMSDTERVLMGMDLKSKK CCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHCCHHHHHHHCCCCCHHHHHHCCCCCCCC DKEC CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]