| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yeiR [C]
Identifier: 21227174
GI number: 21227174
Start: 1259208
End: 1260365
Strand: Direct
Name: yeiR [C]
Synonym: MM_1072
Alternate gene names: 21227174
Gene position: 1259208-1260365 (Clockwise)
Preceding gene: 21227173
Following gene: 21227175
Centisome position: 30.74
GC content: 43.18
Gene sequence:
>1158_bases GTGGAAGTCATTGTTGTTGGAGGTTTCCTGGGAAGCGGAAAGACCACTACCATTATCAATATGGGCAAATACCTCGCAGA TAAAGGGAAAAAAGTTGCAATTATCGTAAACGAGATAGGGGAAATAGGGATTGACGGCGATGTGATTAAGAGATTCGGTT TCGACACCAAGGAAATCACAAGCGGGTGCATCTGCTGTACATTGAAAGTCGGGCTGAGGGCAACAATGAGCACTCTTGTA AAAGAGTATAAGCCCGATATCATAATGATCGAGCCCACAGGAATCGCTTTCCCGAATGTGATCAAAACCGAAGTTGAGCT TATGAATCTTGGAGAGGAAGTGAAAGTTGCTCCACTTGTAACTCTGATTGACGGCAGCCGCTTCAAACACCTGATGAAAG AGGTAAAAGAATTCGCTATGAGGCAGATTATAGATGCTGAAATCCTGGGAATAAATAAGGTAGATCTCATAGAGCCGATC AGGATACCGATACTCGAAACTTCGGTCCAGCAGTTGAACCCTGAAGCAAAGGTGGTCTTGCTTTCGGGAAAGGACACCGG CGAAAGATTTGAGAAATTCATGCAGGTAGTTCTTCCTGATATAAGAGAAGCACCGAAAAAAATCCAGGAAACAGCTACTG CAGAAAATACATCCAGCATTACAGGGCCGCAGGAAACCGAAGACTCCATCAAAGCCTCGGGCGTTGGCAGCTATGCGGCA GAGTTTGAAATTAAAGAAGGAGGAAACCTGAACACAGAAGAAGCCAGGAAACTCACCACCGAATTAATGAATATAATAAA AGGAAAAGTTCTGGAGCTTAACCCTGAATTTGTAGGGCATATAAAACTCTTCCTGGACAATGGGACGGAGACCGTAAAAC AGAGTGTCACCATCTATAATGAAGAGCCTCAGGAAGATGTGATTAAATCAAAAGATGGAGCTTTCCCGACATTCAAGATA CTCTCTGCGGTTTCAAATGTTGACAAAGAAGCTCTGAAAGATGCTGTAAACAGCTCTGTGAAAGAAACATTTGAGAAAAA AGGGATAAATGCGCACAAAACCGAGCATGGACATAAGCACGAAGGACACGCGCATAATGAACACAAACATGAGGGACATA TACAGAGAATCGGGAGCATAAAAGGTATAAAAGAATAA
Upstream 100 bases:
>100_bases TTGACATATATTCCTGAATAAAAAATATATTTACAATACTTTTAATAAAAAACGGAAAGAAAACAATAAGCAGAAAGCGG CAGAAAACGGAGGAAAAAAA
Downstream 100 bases:
>100_bases AAAGACGAAAAAGAAAATGAAGGGCGGGCCAGATAAAAACCTGACTCGTCAAACCCTATTTTAAAACATTTTTACTGAAA TTACTGACCTGATGCCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: P47K [H]
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MEVIVVGGFLGSGKTTTIINMGKYLADKGKKVAIIVNEIGEIGIDGDVIKRFGFDTKEITSGCICCTLKVGLRATMSTLV KEYKPDIIMIEPTGIAFPNVIKTEVELMNLGEEVKVAPLVTLIDGSRFKHLMKEVKEFAMRQIIDAEILGINKVDLIEPI RIPILETSVQQLNPEAKVVLLSGKDTGERFEKFMQVVLPDIREAPKKIQETATAENTSSITGPQETEDSIKASGVGSYAA EFEIKEGGNLNTEEARKLTTELMNIIKGKVLELNPEFVGHIKLFLDNGTETVKQSVTIYNEEPQEDVIKSKDGAFPTFKI LSAVSNVDKEALKDAVNSSVKETFEKKGINAHKTEHGHKHEGHAHNEHKHEGHIQRIGSIKGIKE
Sequences:
>Translated_385_residues MEVIVVGGFLGSGKTTTIINMGKYLADKGKKVAIIVNEIGEIGIDGDVIKRFGFDTKEITSGCICCTLKVGLRATMSTLV KEYKPDIIMIEPTGIAFPNVIKTEVELMNLGEEVKVAPLVTLIDGSRFKHLMKEVKEFAMRQIIDAEILGINKVDLIEPI RIPILETSVQQLNPEAKVVLLSGKDTGERFEKFMQVVLPDIREAPKKIQETATAENTSSITGPQETEDSIKASGVGSYAA EFEIKEGGNLNTEEARKLTTELMNIIKGKVLELNPEFVGHIKLFLDNGTETVKQSVTIYNEEPQEDVIKSKDGAFPTFKI LSAVSNVDKEALKDAVNSSVKETFEKKGINAHKTEHGHKHEGHAHNEHKHEGHIQRIGSIKGIKE >Mature_385_residues MEVIVVGGFLGSGKTTTIINMGKYLADKGKKVAIIVNEIGEIGIDGDVIKRFGFDTKEITSGCICCTLKVGLRATMSTLV KEYKPDIIMIEPTGIAFPNVIKTEVELMNLGEEVKVAPLVTLIDGSRFKHLMKEVKEFAMRQIIDAEILGINKVDLIEPI RIPILETSVQQLNPEAKVVLLSGKDTGERFEKFMQVVLPDIREAPKKIQETATAENTSSITGPQETEDSIKASGVGSYAA EFEIKEGGNLNTEEARKLTTELMNIIKGKVLELNPEFVGHIKLFLDNGTETVKQSVTIYNEEPQEDVIKSKDGAFPTFKI LSAVSNVDKEALKDAVNSSVKETFEKKGINAHKTEHGHKHEGHAHNEHKHEGHIQRIGSIKGIKE
Specific function: The presence of P47K is critical for the expression of the nitrile hydratase genes. May stabilize or activate the nitrile hydratase proteins [H]
COG id: COG0523
COG function: function code R; Putative GTPases (G3E family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cobW C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI126722884, Length=189, Percent_Identity=30.1587301587302, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI223941779, Length=189, Percent_Identity=30.1587301587302, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI148727351, Length=189, Percent_Identity=30.6878306878307, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI146231952, Length=189, Percent_Identity=30.6878306878307, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI33469141, Length=189, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI223941776, Length=182, Percent_Identity=30.2197802197802, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI1788499, Length=167, Percent_Identity=32.3353293413174, Blast_Score=94, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003495 - InterPro: IPR011629 [H]
Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]
EC number: NA
Molecular weight: Translated: 42368; Mature: 42368
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVIVVGGFLGSGKTTTIINMGKYLADKGKKVAIIVNEIGEIGIDGDVIKRFGFDTKEIT CEEEEEEEEECCCCEEEEEEHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHC SGCICCTLKVGLRATMSTLVKEYKPDIIMIEPTGIAFPNVIKTEVELMNLGEEVKVAPLV CCEEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEE TLIDGSRFKHLMKEVKEFAMRQIIDAEILGINKVDLIEPIRIPILETSVQQLNPEAKVVL EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE LSGKDTGERFEKFMQVVLPDIREAPKKIQETATAENTSSITGPQETEDSIKASGVGSYAA EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCE EFEIKEGGNLNTEEARKLTTELMNIIKGKVLELNPEFVGHIKLFLDNGTETVKQSVTIYN EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEECCHHHHHHCEEEEC EEPQEDVIKSKDGAFPTFKILSAVSNVDKEALKDAVNSSVKETFEKKGINAHKTEHGHKH CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC EGHAHNEHKHEGHIQRIGSIKGIKE CCCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MEVIVVGGFLGSGKTTTIINMGKYLADKGKKVAIIVNEIGEIGIDGDVIKRFGFDTKEIT CEEEEEEEEECCCCEEEEEEHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHC SGCICCTLKVGLRATMSTLVKEYKPDIIMIEPTGIAFPNVIKTEVELMNLGEEVKVAPLV CCEEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEE TLIDGSRFKHLMKEVKEFAMRQIIDAEILGINKVDLIEPIRIPILETSVQQLNPEAKVVL EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE LSGKDTGERFEKFMQVVLPDIREAPKKIQETATAENTSSITGPQETEDSIKASGVGSYAA EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCE EFEIKEGGNLNTEEARKLTTELMNIIKGKVLELNPEFVGHIKLFLDNGTETVKQSVTIYN EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEECCHHHHHHCEEEEC EEPQEDVIKSKDGAFPTFKILSAVSNVDKEALKDAVNSSVKETFEKKGINAHKTEHGHKH CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC EGHAHNEHKHEGHIQRIGSIKGIKE CCCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2013568 [H]