| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227042
Identifier: 21227042
GI number: 21227042
Start: 1112100
End: 1113728
Strand: Direct
Name: 21227042
Synonym: MM_0940
Alternate gene names: NA
Gene position: 1112100-1113728 (Clockwise)
Preceding gene: 21227037
Following gene: 298205308
Centisome position: 27.15
GC content: 47.51
Gene sequence:
>1629_bases ATGAGATATGGAGTTGCAGTTGACCTGGGAACAAGTGGGTATCGAGCTCAGAAGATTGACATGGATACCAGAGAAATCAA AAGGACAGTAATAACACTGAGAAATCCTCTTCCCGGAGCGAATGTGATGGATCACATGGACTTCGCAATTCGCTACGGGC AGGATCTTGCACATGGGCTATCGGTAAATGCGGTAAAAACCCTGCTCCAGACGCTTGATGTGCCTAGCGAGGAACTGGAC AGAATTTCAATCTGCGGAAACCCGATTCAGTTGTCTATTTTCCAGGGAATCACTATCGAAGACCTGGCTTACGCAGGGGA ACGGAAGAAAAAGAAGTACAACATACAGGAACAGACCAGAAACGCGAGGATAATACCCAGCAGCGAAATTTCAGGGCTTG AAGAGTTCAACTGCGAAGTTGTAGTCCCTCCTGCCATAAAACACGAGGTAGGAGCGGATGCCCTTGCTCTCATAACCAAA TCGGGAATGCTTGAAAGTGACGAAATATCAATTGCAACGGATTATGGGACAAATGCCGAGATGGCACTCAAAGTAAAGGA TATCATTTATACAGGCTCGGCAGCAGCAGGTCCTGCGCTTGAAGGGCAGCAGATAAAGCACGGAACCCTTGCTTCTCCCT TTGCAATTTCGGACTTTGAATTCGAAAACGGGGCATTGAGGAACTATGTATTGAACGAAGAGATGAAGCCCGACCCTGGG GATCTTGTTGACCCTAAAACCGGGGAAATCCTTGAAGAAGGTAAGATTAAAGCAAAAGGGATCACAGGTACTGGAGTTAT TGCCCTTATTGAAAAAGCCATAGGGTATGGCCTGGTTGAACTTCCGAAAGTCAAGACCCCGGACGGATTTATTCACCTGC AGAACAATATTTCTTTCTCGGAAAGAGACCTGAAAGAAGCCGGAAAAGCTATTGGCGCTATCAGAGCAGGGCATATAACT CTCTGTGCGGCTGCAGGCATCGAAATGACAGATATAGATGTTGCCTATATGGCAGGGGCTGCCGGAACTTACATGGACGC TGAAAAAGCCCAGAAAATTGGATTAATCCCTTACTCGACAGGAAAAATTGCTCAGCTCGGAAATACTTCACTTGCAGTTG CAAGGGAGACCCTGCTTTCAGAGGAGAGGCTCTGGGAGCTTCAGGACATTGCAAGCCAGATAATAGGCACTCATATAATG TTTGCGACTGTTCCGGAATTCAGGGATGCATATGTCCTTGAACTTGCGTACTGGGAAGAGGGGATGCCCTTCAAGATGTT TAAGAAATACCTTAAAAAGAAGGGGCTTCCGTCACTCGATGACCCTATAAGCAACCCTGTGGTCGATAAGCGCGTGGAAA GAGATATCCCTGTGCTTGGAGAGGAGGGCCTGTACGTACTGGAAAGGGTAGGGACCTATATGACCATGGTAGTCTCTGAC TGCCCCGAGTGCAGGAAGTGCATAAAGGTCTGCCCCAACGATGCCATTTCAATTGACGAAGAAAACAGGGTTATGATAAG CACTGACCTCTGTGAAGGTGCACACTGTCAGAAATGCATTAGAGCCTGCCCTCCGGACAAATTCGACTGGAAGAACCTGG AAGTTTTCAAACCCCCACAGCAGGAGTAA
Upstream 100 bases:
>100_bases TTATTTATACGTCATTTTTCAAAGTAATATTACACAAAATCTCAAACGGCTTAAGTGATATGTCAAAAACCCGGAAAAAT AAAAAGATGAGGGGATCTAT
Downstream 100 bases:
>100_bases GCCAAATCTGGTTACTACTGAACCGGCACTTTAATACTGATCGTGCAGGAAGACATAAGTTTAAAATAAATATTTAATGA GAGTTGAAGCTGAGAGACGC
Product: putative flavoprotein
Products: NA
Alternate protein names: Flavoprotein; Vitamin; Corrinoid Activation/Regeneration Protein; Methyltransferase Activation Protein MapA; Methylamine Methyltransferase Corrinoid Activation Protein
Number of amino acids: Translated: 542; Mature: 542
Protein sequence:
>542_residues MRYGVAVDLGTSGYRAQKIDMDTREIKRTVITLRNPLPGANVMDHMDFAIRYGQDLAHGLSVNAVKTLLQTLDVPSEELD RISICGNPIQLSIFQGITIEDLAYAGERKKKKYNIQEQTRNARIIPSSEISGLEEFNCEVVVPPAIKHEVGADALALITK SGMLESDEISIATDYGTNAEMALKVKDIIYTGSAAAGPALEGQQIKHGTLASPFAISDFEFENGALRNYVLNEEMKPDPG DLVDPKTGEILEEGKIKAKGITGTGVIALIEKAIGYGLVELPKVKTPDGFIHLQNNISFSERDLKEAGKAIGAIRAGHIT LCAAAGIEMTDIDVAYMAGAAGTYMDAEKAQKIGLIPYSTGKIAQLGNTSLAVARETLLSEERLWELQDIASQIIGTHIM FATVPEFRDAYVLELAYWEEGMPFKMFKKYLKKKGLPSLDDPISNPVVDKRVERDIPVLGEEGLYVLERVGTYMTMVVSD CPECRKCIKVCPNDAISIDEENRVMISTDLCEGAHCQKCIRACPPDKFDWKNLEVFKPPQQE
Sequences:
>Translated_542_residues MRYGVAVDLGTSGYRAQKIDMDTREIKRTVITLRNPLPGANVMDHMDFAIRYGQDLAHGLSVNAVKTLLQTLDVPSEELD RISICGNPIQLSIFQGITIEDLAYAGERKKKKYNIQEQTRNARIIPSSEISGLEEFNCEVVVPPAIKHEVGADALALITK SGMLESDEISIATDYGTNAEMALKVKDIIYTGSAAAGPALEGQQIKHGTLASPFAISDFEFENGALRNYVLNEEMKPDPG DLVDPKTGEILEEGKIKAKGITGTGVIALIEKAIGYGLVELPKVKTPDGFIHLQNNISFSERDLKEAGKAIGAIRAGHIT LCAAAGIEMTDIDVAYMAGAAGTYMDAEKAQKIGLIPYSTGKIAQLGNTSLAVARETLLSEERLWELQDIASQIIGTHIM FATVPEFRDAYVLELAYWEEGMPFKMFKKYLKKKGLPSLDDPISNPVVDKRVERDIPVLGEEGLYVLERVGTYMTMVVSD CPECRKCIKVCPNDAISIDEENRVMISTDLCEGAHCQKCIRACPPDKFDWKNLEVFKPPQQE >Mature_542_residues MRYGVAVDLGTSGYRAQKIDMDTREIKRTVITLRNPLPGANVMDHMDFAIRYGQDLAHGLSVNAVKTLLQTLDVPSEELD RISICGNPIQLSIFQGITIEDLAYAGERKKKKYNIQEQTRNARIIPSSEISGLEEFNCEVVVPPAIKHEVGADALALITK SGMLESDEISIATDYGTNAEMALKVKDIIYTGSAAAGPALEGQQIKHGTLASPFAISDFEFENGALRNYVLNEEMKPDPG DLVDPKTGEILEEGKIKAKGITGTGVIALIEKAIGYGLVELPKVKTPDGFIHLQNNISFSERDLKEAGKAIGAIRAGHIT LCAAAGIEMTDIDVAYMAGAAGTYMDAEKAQKIGLIPYSTGKIAQLGNTSLAVARETLLSEERLWELQDIASQIIGTHIM FATVPEFRDAYVLELAYWEEGMPFKMFKKYLKKKGLPSLDDPISNPVVDKRVERDIPVLGEEGLYVLERVGTYMTMVVSD CPECRKCIKVCPNDAISIDEENRVMISTDLCEGAHCQKCIRACPPDKFDWKNLEVFKPPQQE
Specific function: Unknown
COG id: COG3894
COG function: function code R; Uncharacterized metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59509; Mature: 59509
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYGVAVDLGTSGYRAQKIDMDTREIKRTVITLRNPLPGANVMDHMDFAIRYGQDLAHGL CCCEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHCC SVNAVKTLLQTLDVPSEELDRISICGNPIQLSIFQGITIEDLAYAGERKKKKYNIQEQTR CHHHHHHHHHHHCCCHHHHCEEEECCCCEEEEEECCCCHHHHHHHCHHHHHCCCHHHHCC NARIIPSSEISGLEEFNCEVVVPPAIKHEVGADALALITKSGMLESDEISIATDYGTNAE CCEECCCHHHCCHHHCCCEEEECCHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCE MALKVKDIIYTGSAAAGPALEGQQIKHGTLASPFAISDFEFENGALRNYVLNEEMKPDPG EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHEEECCCCCCCCC DLVDPKTGEILEEGKIKAKGITGTGVIALIEKAIGYGLVELPKVKTPDGFIHLQNNISFS CCCCCCCCCHHHCCCEEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCC ERDLKEAGKAIGAIRAGHITLCAAAGIEMTDIDVAYMAGAAGTYMDAEKAQKIGLIPYST HHHHHHHHHHHHHHCCCCEEEEEECCCEEECCHHHHHCCCCCCCCCHHHHHHCCEEECCC GKIAQLGNTSLAVARETLLSEERLWELQDIASQIIGTHIMFATVPEFRDAYVLELAYWEE CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEECCC GMPFKMFKKYLKKKGLPSLDDPISNPVVDKRVERDIPVLGEEGLYVLERVGTYMTMVVSD CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC CPECRKCIKVCPNDAISIDEENRVMISTDLCEGAHCQKCIRACPPDKFDWKNLEVFKPPQ CHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCCC QE CC >Mature Secondary Structure MRYGVAVDLGTSGYRAQKIDMDTREIKRTVITLRNPLPGANVMDHMDFAIRYGQDLAHGL CCCEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHCC SVNAVKTLLQTLDVPSEELDRISICGNPIQLSIFQGITIEDLAYAGERKKKKYNIQEQTR CHHHHHHHHHHHCCCHHHHCEEEECCCCEEEEEECCCCHHHHHHHCHHHHHCCCHHHHCC NARIIPSSEISGLEEFNCEVVVPPAIKHEVGADALALITKSGMLESDEISIATDYGTNAE CCEECCCHHHCCHHHCCCEEEECCHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCE MALKVKDIIYTGSAAAGPALEGQQIKHGTLASPFAISDFEFENGALRNYVLNEEMKPDPG EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHEEECCCCCCCCC DLVDPKTGEILEEGKIKAKGITGTGVIALIEKAIGYGLVELPKVKTPDGFIHLQNNISFS CCCCCCCCCHHHCCCEEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCC ERDLKEAGKAIGAIRAGHITLCAAAGIEMTDIDVAYMAGAAGTYMDAEKAQKIGLIPYST HHHHHHHHHHHHHHCCCCEEEEEECCCEEECCHHHHHCCCCCCCCCHHHHHHCCEEECCC GKIAQLGNTSLAVARETLLSEERLWELQDIASQIIGTHIMFATVPEFRDAYVLELAYWEE CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEECCC GMPFKMFKKYLKKKGLPSLDDPISNPVVDKRVERDIPVLGEEGLYVLERVGTYMTMVVSD CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC CPECRKCIKVCPNDAISIDEENRVMISTDLCEGAHCQKCIRACPPDKFDWKNLEVFKPPQ CHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCCC QE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA