| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227039
Identifier: 21227039
GI number: 21227039
Start: 1105539
End: 1107488
Strand: Reverse
Name: 21227039
Synonym: MM_0937
Alternate gene names: NA
Gene position: 1107488-1105539 (Counterclockwise)
Preceding gene: 21227040
Following gene: 21227038
Centisome position: 27.04
GC content: 46.05
Gene sequence:
>1950_bases ATGAACGCTATAAATACCCTGGCATTCAGGATTTTCGGAGAAAAAATTCTTGAAAAAGAAGATAAGTTTGCCCTTCTCAG GATAAAGCTTCGTCAGGCCCAAATTCCCTTGCCTGTGGAGCAGTATGTTTCAACCGCAATTTTATTTTCCCTGCTTGCGG GAATTTTTGGAGGGCTTGCAGGCTTGCTTCTCGGGAGTCAACTTTTCCGGGGAATTACTCCGGAAAGCATTGTTTCAATG TTCGGCATCTCGAACAGGGTAACCCGGGCGGTTGAGACTCCTGCATTTATCGAATCTCATCTCCCTTTTATCCTTACGGT TATAGGGGGAATCATTCTCTTTTCTATGATTTCTGCCCTTACTTACGGGCTTATCATGGCATACCCGCCCATGAAGGCTG ACAGCAGGAAGCGCGCTATCAACGCATCAATGCCTCATGCAACAGCTTTTCTCTATGTCCTGCAGAGAGGCGGAGGCATG ACCATCTATGATATCATGAAGTCGCTTTCGAAGCATTCCCATCTTTACGGGACCACCGCCCGTGAATTCGGGAATATTGT CAGGGATATAGAGTACTTTGGAAAAGACCTTCAGGATTCTCTCTGGGACTCTGCTGACAGGACGCCTTCTGAGCAGTTCA AAGACCTTGTAGACGGTCTGATTTCTATAGTTTCAAGCGGAGGAGACATTACTCTTTACCTGAAAAACAAGACTGACCTT TATAAATCGAATGCAAATAAGGAACACAAACGTTTCCTTGAAACCCTCGGTCTCCTGGCAGAGGTTTATATTACGGTGTT CGTTGTAGGTCCCCTTTTCCTTATGGTTATCCTCGTTGTTATGAATATGATCGATAACGGGGGCCCAACCCAGCTCTATG TCCTTGTATACGGTGCAATTCCTTTCGGGACCATGATTTTCCTTGTCTTTCTGGATATGCTTACAGGAGATGCGGAAAAG ATGCCTGAAGAGCAAATCTCTGCAATCAGGCCGGATTCTTTCAGCGACGTCAGGGTAAAACCGTTAACCGAAGTTGATGA AGAGCTACTTCAGAAAATGGAGTTCTTTGAAAAGGTCTCCAGAGTCAAAAGAGTTCTCCTGCATCCCATAAGGGCTATGA TTGACAGACCTGTATATGCTTTCGTGGTGAGCGCTCCGGTCGCCCTGGGATATTTTGTTTCTGCTTACATGGAACACGGG CCTTACTATGGAGGTTTTGTCGAGACAGCATCCACTCTTGACGACTATCTCTATGCAACTCTTCTTATTCTTTTCATTCC TTACATAATCTTCCACGAACTTGAAGTCCGCAGGATAAGGCAGATTGAGGACCAGGTTCCTGAATTCCTTAAAAGGCTTG CAAGTATCAACGGTACAGGAATTCTGCTTGCCGATGCCATTGCCATTACAGCCCAGTCAAATATGGGCAGGCTTAAATCC GAAATTAAACGTACGGTTGCGGATATCCGCTGGAATTCAAACCTTGTAGACGCTATGAAGCGTTTTGAAGCCAGGATCCG GACCAACATGACCAGACGTAGCCTGAGCCTTATTGCCAAAGCAAGCGAGTCCACAGGAGATATACATCAGGTTATCAGCA CGGTTGCGGATGATGCAGATATCGAGAAAAACCTCAAGAAAGAGCGTTCTGCAGAGATGTTTATCTATGTCTTTATCATC TTTGTGACGTTCTTTGTTTTTCTGGTGATAGTATACGTGCTTGCTGCGTTCTTCCTGCCTGCACTTGACGGTTCGAGTAA CCCAGCAATGTCCATGGGAGGTTTTGACCTGAAGGAATACACCCTTCTCTTCTTCCATGCAGCTCTCCTGCAGGGTTTCG GCTCAGGGCTGGTTGCAGGTAAAATGGGCTCGGGAAACATTTCCTCAGGGATCAAGCACTCCCTTGCGATGATGTCGCTG TCTTATGTGCTGTTCGTTATGTTTATCTGA
Upstream 100 bases:
>100_bases AGTACATATGTATGCTACAAATCCGCAGCTTGTAATGGAAGCGGTTGGAAACGATACCCTGCGGGATATGGTAGCACATC ACAGTTAATCGGGGGTATCC
Downstream 100 bases:
>100_bases GTCCTGGGTTTGAGGTTAAGCCTTCGAGATTTTTCCGGAGGCTTACCTGAATTTTTATCCAATTTTTACCTGCTTTTTAA CCCATTCCTTTTTAATATCT
Product: putative flagella-like protein J
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 649; Mature: 649
Protein sequence:
>649_residues MNAINTLAFRIFGEKILEKEDKFALLRIKLRQAQIPLPVEQYVSTAILFSLLAGIFGGLAGLLLGSQLFRGITPESIVSM FGISNRVTRAVETPAFIESHLPFILTVIGGIILFSMISALTYGLIMAYPPMKADSRKRAINASMPHATAFLYVLQRGGGM TIYDIMKSLSKHSHLYGTTAREFGNIVRDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDL YKSNANKEHKRFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGPTQLYVLVYGAIPFGTMIFLVFLDMLTGDAEK MPEEQISAIRPDSFSDVRVKPLTEVDEELLQKMEFFEKVSRVKRVLLHPIRAMIDRPVYAFVVSAPVALGYFVSAYMEHG PYYGGFVETASTLDDYLYATLLILFIPYIIFHELEVRRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKS EIKRTVADIRWNSNLVDAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKERSAEMFIYVFII FVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGFDLKEYTLLFFHAALLQGFGSGLVAGKMGSGNISSGIKHSLAMMSL SYVLFVMFI
Sequences:
>Translated_649_residues MNAINTLAFRIFGEKILEKEDKFALLRIKLRQAQIPLPVEQYVSTAILFSLLAGIFGGLAGLLLGSQLFRGITPESIVSM FGISNRVTRAVETPAFIESHLPFILTVIGGIILFSMISALTYGLIMAYPPMKADSRKRAINASMPHATAFLYVLQRGGGM TIYDIMKSLSKHSHLYGTTAREFGNIVRDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDL YKSNANKEHKRFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGPTQLYVLVYGAIPFGTMIFLVFLDMLTGDAEK MPEEQISAIRPDSFSDVRVKPLTEVDEELLQKMEFFEKVSRVKRVLLHPIRAMIDRPVYAFVVSAPVALGYFVSAYMEHG PYYGGFVETASTLDDYLYATLLILFIPYIIFHELEVRRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKS EIKRTVADIRWNSNLVDAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKERSAEMFIYVFII FVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGFDLKEYTLLFFHAALLQGFGSGLVAGKMGSGNISSGIKHSLAMMSL SYVLFVMFI >Mature_649_residues MNAINTLAFRIFGEKILEKEDKFALLRIKLRQAQIPLPVEQYVSTAILFSLLAGIFGGLAGLLLGSQLFRGITPESIVSM FGISNRVTRAVETPAFIESHLPFILTVIGGIILFSMISALTYGLIMAYPPMKADSRKRAINASMPHATAFLYVLQRGGGM TIYDIMKSLSKHSHLYGTTAREFGNIVRDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDL YKSNANKEHKRFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGPTQLYVLVYGAIPFGTMIFLVFLDMLTGDAEK MPEEQISAIRPDSFSDVRVKPLTEVDEELLQKMEFFEKVSRVKRVLLHPIRAMIDRPVYAFVVSAPVALGYFVSAYMEHG PYYGGFVETASTLDDYLYATLLILFIPYIIFHELEVRRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKS EIKRTVADIRWNSNLVDAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKERSAEMFIYVFII FVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGFDLKEYTLLFFHAALLQGFGSGLVAGKMGSGNISSGIKHSLAMMSL SYVLFVMFI
Specific function: Unknown
COG id: COG2064
COG function: function code NU; Flp pilus assembly protein TadC
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii flaJ [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018076 [H]
Pfam domain/function: PF00482 GSPII_F [H]
EC number: NA
Molecular weight: Translated: 72403; Mature: 72403
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAINTLAFRIFGEKILEKEDKFALLRIKLRQAQIPLPVEQYVSTAILFSLLAGIFGGLA CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH GLLLGSQLFRGITPESIVSMFGISNRVTRAVETPAFIESHLPFILTVIGGIILFSMISAL HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TYGLIMAYPPMKADSRKRAINASMPHATAFLYVLQRGGGMTIYDIMKSLSKHSHLYGTTA HHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCHH REFGNIVRDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDL HHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH YKSNANKEHKRFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGPTQLYVLVYGAI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHH PFGTMIFLVFLDMLTGDAEKMPEEQISAIRPDSFSDVRVKPLTEVDEELLQKMEFFEKVS HHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RVKRVLLHPIRAMIDRPVYAFVVSAPVALGYFVSAYMEHGPYYGGFVETASTLDDYLYAT HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LLILFIPYIIFHELEVRRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH EIKRTVADIRWNSNLVDAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDAD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH IEKNLKKERSAEMFIYVFIIFVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGFDLKEY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH TLLFFHAALLQGFGSGLVAGKMGSGNISSGIKHSLAMMSLSYVLFVMFI HHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MNAINTLAFRIFGEKILEKEDKFALLRIKLRQAQIPLPVEQYVSTAILFSLLAGIFGGLA CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH GLLLGSQLFRGITPESIVSMFGISNRVTRAVETPAFIESHLPFILTVIGGIILFSMISAL HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TYGLIMAYPPMKADSRKRAINASMPHATAFLYVLQRGGGMTIYDIMKSLSKHSHLYGTTA HHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCHH REFGNIVRDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDL HHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH YKSNANKEHKRFLETLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGPTQLYVLVYGAI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHH PFGTMIFLVFLDMLTGDAEKMPEEQISAIRPDSFSDVRVKPLTEVDEELLQKMEFFEKVS HHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RVKRVLLHPIRAMIDRPVYAFVVSAPVALGYFVSAYMEHGPYYGGFVETASTLDDYLYAT HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LLILFIPYIIFHELEVRRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH EIKRTVADIRWNSNLVDAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDAD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH IEKNLKKERSAEMFIYVFIIFVTFFVFLVIVYVLAAFFLPALDGSSNPAMSMGGFDLKEY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH TLLFFHAALLQGFGSGLVAGKMGSGNISSGIKHSLAMMSLSYVLFVMFI HHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]