| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yjiL [C]
Identifier: 21227017
GI number: 21227017
Start: 1082012
End: 1083259
Strand: Direct
Name: yjiL [C]
Synonym: MM_0915
Alternate gene names: 21227017
Gene position: 1082012-1083259 (Clockwise)
Preceding gene: 21227016
Following gene: 21227018
Centisome position: 26.41
GC content: 48.88
Gene sequence:
>1248_bases ATGAGCACTGAAGAATCCGGACTTGTCAAGATTGCCCTGGTGTCCTGCGGCTCCGAATATGCGGGAGTCCAGCCTGAATT TGATGAAGCTGCAGCCAAAGTGAAAGCAAAATTTATTTTTCCTGAAGTTGACGTTGCATCCATAGACACCATAGGCAGGG ATTTCGGGCTTGAAGTTGCAAGCGGAGACCTGAGGCTTATGATGGCTCGGGCAAAAGCTGTCGTTGAAGGGACAACCAAT GCCGATGGAGTCTTTATCACTACCTGCTTTCGCTGTGCAGAAGGAGCTATCGTACGGAACGAGGTCAGAAGGTACATCCA TAGACACTCGAATATTCCGGTTATTAGCTACTCTTTTACCGAGAGCACCACTGCAGGTACTCTGCTCACCCGACTGGAAG CCCTTACTACAATTGTCAGACGCAGGCACCTCCTTACAAGGGAAGTTCAGCACGGGCTTACTGCCGGGATAGACTCAGGG TCAACAACTACAAAAGCAGTGGTAATGAAGGACAATAAAATAATAGGCAAAGGGTGGGTGCCGACAACAAAAGTCATTGA GAGCGCTGAAGAAGCATACTCTATTGCCCTGAAAGAAGCCGGAGTTTCCAGGGAAGAAGTCCAGGCTATGGGAACGACAG GATACGGACGCTTCCTTATAGGAAACCATTTTAACGCTCAGCTTATCCAGGAAGAGATAACCGTCAATTCAAAGGGAGCG GTCTATCTCGCAGACAGGCAGAAGGGGCCTGCAACAGTTATTGACATAGGCGGGATGGACAACAAGGCGATCTCGGTTGA AGATGGAATTCCGGGAATGTTTACAATGGGCGGGATCTGCGCCGGAGCTTCAGGACGTTTCTTTGAAATGATTTCAAAAA GACTTGGTGTGGATATCACCGAACTTGGAGCTCTTGCAGTTAAAGGTATGCATGAAAATGTATCCATGAACAGCTACTGC ATAGTTTTCGGGATTCAGTCCCTTGTAAATTCCCTTGCCAAAGGGTCCACCCCTGAAGATGTAGCCGCTGCTGCATGTTA TAGTGTGGTAGAGCAGATTTATGAGCAGCAGCTTCAGGAAGTTGACGTAAAAGAACCCCTGATTCTCGTAGGCGGCTCTT CCCTGATCGAAGGGGTTCCAAAAGCCCTTGGAAAGCTTCTCAAGATCGATGTCCTTGTTCCTGAAAACTCCCACCTGATA GGGGCAGTAGGAGCAGCACTTCTTGCTTCCGGCTTCGTGGAGGAGTGA
Upstream 100 bases:
>100_bases TAAGCCAGATCGCAGAATTCCTGGAATCATTGCCTAAAGAAAATTCTGAAGAAAGTAATAAGGCAGACAAAGAAAAAACA GCTGAAGAGGAGGACAGTAA
Downstream 100 bases:
>100_bases GATCAAAATGGATTCGCTTGAGACCTTTGTTGTCGAGTCCGCAATTGATTCGGAAACGGAGTTTTACAGAAAGATCATCG AGGACAACCTTGCGAGTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSTEESGLVKIALVSCGSEYAGVQPEFDEAAAKVKAKFIFPEVDVASIDTIGRDFGLEVASGDLRLMMARAKAVVEGTTN ADGVFITTCFRCAEGAIVRNEVRRYIHRHSNIPVISYSFTESTTAGTLLTRLEALTTIVRRRHLLTREVQHGLTAGIDSG STTTKAVVMKDNKIIGKGWVPTTKVIESAEEAYSIALKEAGVSREEVQAMGTTGYGRFLIGNHFNAQLIQEEITVNSKGA VYLADRQKGPATVIDIGGMDNKAISVEDGIPGMFTMGGICAGASGRFFEMISKRLGVDITELGALAVKGMHENVSMNSYC IVFGIQSLVNSLAKGSTPEDVAAAACYSVVEQIYEQQLQEVDVKEPLILVGGSSLIEGVPKALGKLLKIDVLVPENSHLI GAVGAALLASGFVEE
Sequences:
>Translated_415_residues MSTEESGLVKIALVSCGSEYAGVQPEFDEAAAKVKAKFIFPEVDVASIDTIGRDFGLEVASGDLRLMMARAKAVVEGTTN ADGVFITTCFRCAEGAIVRNEVRRYIHRHSNIPVISYSFTESTTAGTLLTRLEALTTIVRRRHLLTREVQHGLTAGIDSG STTTKAVVMKDNKIIGKGWVPTTKVIESAEEAYSIALKEAGVSREEVQAMGTTGYGRFLIGNHFNAQLIQEEITVNSKGA VYLADRQKGPATVIDIGGMDNKAISVEDGIPGMFTMGGICAGASGRFFEMISKRLGVDITELGALAVKGMHENVSMNSYC IVFGIQSLVNSLAKGSTPEDVAAAACYSVVEQIYEQQLQEVDVKEPLILVGGSSLIEGVPKALGKLLKIDVLVPENSHLI GAVGAALLASGFVEE >Mature_414_residues STEESGLVKIALVSCGSEYAGVQPEFDEAAAKVKAKFIFPEVDVASIDTIGRDFGLEVASGDLRLMMARAKAVVEGTTNA DGVFITTCFRCAEGAIVRNEVRRYIHRHSNIPVISYSFTESTTAGTLLTRLEALTTIVRRRHLLTREVQHGLTAGIDSGS TTTKAVVMKDNKIIGKGWVPTTKVIESAEEAYSIALKEAGVSREEVQAMGTTGYGRFLIGNHFNAQLIQEEITVNSKGAV YLADRQKGPATVIDIGGMDNKAISVEDGIPGMFTMGGICAGASGRFFEMISKRLGVDITELGALAVKGMHENVSMNSYCI VFGIQSLVNSLAKGSTPEDVAAAACYSVVEQIYEQQLQEVDVKEPLILVGGSSLIEGVPKALGKLLKIDVLVPENSHLIG AVGAALLASGFVEE
Specific function: Unknown
COG id: COG1924
COG function: function code I; Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082426, Length=260, Percent_Identity=31.5384615384615, Blast_Score=99, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002731 - InterPro: IPR008275 - InterPro: IPR017676 [H]
Pfam domain/function: PF01869 BcrAD_BadFG [H]
EC number: NA
Molecular weight: Translated: 44183; Mature: 44052
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEESGLVKIALVSCGSEYAGVQPEFDEAAAKVKAKFIFPEVDVASIDTIGRDFGLEVA CCCCCCCEEEEEEEECCCHHCCCCCCHHHHHHHHEEEEECCCCCHHHHHHCCHHCCCEEE SGDLRLMMARAKAVVEGTTNADGVFITTCFRCAEGAIVRNEVRRYIHRHSNIPVISYSFT CCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECC ESTTAGTLLTRLEALTTIVRRRHLLTREVQHGLTAGIDSGSTTTKAVVMKDNKIIGKGWV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCEEEEEEECCEEEECCCC PTTKVIESAEEAYSIALKEAGVSREEVQAMGTTGYGRFLIGNHFNAQLIQEEITVNSKGA CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHEECCCCE VYLADRQKGPATVIDIGGMDNKAISVEDGIPGMFTMGGICAGASGRFFEMISKRLGVDIT EEEEECCCCCEEEEEECCCCCCEEEECCCCCCHHHHCCEEECCCCHHHHHHHHHHCCCHH ELGALAVKGMHENVSMNSYCIVFGIQSLVNSLAKGSTPEDVAAAACYSVVEQIYEQQLQE HHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH VDVKEPLILVGGSSLIEGVPKALGKLLKIDVLVPENSHLIGAVGAALLASGFVEE CCCCCCEEEECCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure STEESGLVKIALVSCGSEYAGVQPEFDEAAAKVKAKFIFPEVDVASIDTIGRDFGLEVA CCCCCCEEEEEEEECCCHHCCCCCCHHHHHHHHEEEEECCCCCHHHHHHCCHHCCCEEE SGDLRLMMARAKAVVEGTTNADGVFITTCFRCAEGAIVRNEVRRYIHRHSNIPVISYSFT CCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECC ESTTAGTLLTRLEALTTIVRRRHLLTREVQHGLTAGIDSGSTTTKAVVMKDNKIIGKGWV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCEEEEEEECCEEEECCCC PTTKVIESAEEAYSIALKEAGVSREEVQAMGTTGYGRFLIGNHFNAQLIQEEITVNSKGA CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHEECCCCE VYLADRQKGPATVIDIGGMDNKAISVEDGIPGMFTMGGICAGASGRFFEMISKRLGVDIT EEEEECCCCCEEEEEECCCCCCEEEECCCCCCHHHHCCEEECCCCHHHHHHHHHHCCCHH ELGALAVKGMHENVSMNSYCIVFGIQSLVNSLAKGSTPEDVAAAACYSVVEQIYEQQLQE HHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH VDVKEPLILVGGSSLIEGVPKALGKLLKIDVLVPENSHLIGAVGAALLASGFVEE CCCCCCEEEECCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]