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The map label for this gene is ygcA [C]

Identifier: 21227004

GI number: 21227004

Start: 1066415

End: 1067254

Strand: Reverse

Name: ygcA [C]

Synonym: MM_0902

Alternate gene names: 21227004

Gene position: 1067254-1066415 (Counterclockwise)

Preceding gene: 21227005

Following gene: 21227002

Centisome position: 26.05

GC content: 44.64

Gene sequence:

>840_bases
ATGGATCTCAAAATCGACTGGAATGAACTCTGGAAAGAGAAAATGGAATTGCAAAGTAAAACAAAAACGAATACCGATTG
CACGAATATGTGGAAAAGCCAAAAAAGTGCAAAACGTTTCTGGGATATGACTCAGGAAAATAAAGGCAGGGTTGAAAAAA
CTCTATCAGGAATGGCTCTTACTCCTGAGTCCAGAGTCCTGGATATAGGTGCCGGCCCGGGGAGCCTGGCAATTCCTCTT
GCTGAGATGGTTGCACATGTGACAGCAGTCGAGCCTGCAGAAGGAATGATGGAGATACTGAAACAGAACATGGAGACCTA
TGGGACCAGGAATATCGACTGTGTTTATAAAGACTGGGAAACTGTTGACGCAGGGTCTGACCTCTGCCCTCCTTATGATG
TTGTATTCGCGTCATATTCACTGGGCATGAAAGATATCCGGGCTTCAATCCAGAAAATGATTGACGTCTCTTCAGGATAT
GTTTACCTTTACTGGTTTGCAGGCGACACATCTTGGGACATTCATTCCCGAAAGCTCTGGCCTATCCTTCATGGCTGTGA
GTACAGGCAGGGCCCGAAGGCAGATGTCCTTTACAACGTACTCTACGATATGGGCATCTATCCGAATATGAAAGTCTTTT
CTTTTGAACATAATAACCGGTTTGAAAACATTGAAGAAGCTCTTGAGCACTTTAAGCCTCAATATGCCTTATCCTCGCCT
GAGCAGGAAGAAATACTCAGGTCTTACCTTCTGGATGTGCTAGAAGAAGAAAATGGAGCCCTCGTGCAGAAAGGCAAAAG
CACAAGGGTGAAGATGTGGTGGAAGGTTTCTTCTTTTTGA

Upstream 100 bases:

>100_bases
CATGTGCAGGATTTTTTAATAAATTACTTATTTTTTAACACTCATTTAACTTTCTATATTACCTGTGGTCAAACCAGGAA
AAAACCAACGAGGATGAAGA

Downstream 100 bases:

>100_bases
AAAAAAACGAGGGTGTTTTTTAGCCGTTCAGGCTTGCCCTCATGTCACAATATCTTTATCACGAGCAGCTCTTATCTTTT
TGAATATTTCCATCACAACA

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MDLKIDWNELWKEKMELQSKTKTNTDCTNMWKSQKSAKRFWDMTQENKGRVEKTLSGMALTPESRVLDIGAGPGSLAIPL
AEMVAHVTAVEPAEGMMEILKQNMETYGTRNIDCVYKDWETVDAGSDLCPPYDVVFASYSLGMKDIRASIQKMIDVSSGY
VYLYWFAGDTSWDIHSRKLWPILHGCEYRQGPKADVLYNVLYDMGIYPNMKVFSFEHNNRFENIEEALEHFKPQYALSSP
EQEEILRSYLLDVLEEENGALVQKGKSTRVKMWWKVSSF

Sequences:

>Translated_279_residues
MDLKIDWNELWKEKMELQSKTKTNTDCTNMWKSQKSAKRFWDMTQENKGRVEKTLSGMALTPESRVLDIGAGPGSLAIPL
AEMVAHVTAVEPAEGMMEILKQNMETYGTRNIDCVYKDWETVDAGSDLCPPYDVVFASYSLGMKDIRASIQKMIDVSSGY
VYLYWFAGDTSWDIHSRKLWPILHGCEYRQGPKADVLYNVLYDMGIYPNMKVFSFEHNNRFENIEEALEHFKPQYALSSP
EQEEILRSYLLDVLEEENGALVQKGKSTRVKMWWKVSSF
>Mature_279_residues
MDLKIDWNELWKEKMELQSKTKTNTDCTNMWKSQKSAKRFWDMTQENKGRVEKTLSGMALTPESRVLDIGAGPGSLAIPL
AEMVAHVTAVEPAEGMMEILKQNMETYGTRNIDCVYKDWETVDAGSDLCPPYDVVFASYSLGMKDIRASIQKMIDVSSGY
VYLYWFAGDTSWDIHSRKLWPILHGCEYRQGPKADVLYNVLYDMGIYPNMKVFSFEHNNRFENIEEALEHFKPQYALSSP
EQEEILRSYLLDVLEEENGALVQKGKSTRVKMWWKVSSF

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 32193; Mature: 32193

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKIDWNELWKEKMELQSKTKTNTDCTNMWKSQKSAKRFWDMTQENKGRVEKTLSGMAL
CCCEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEE
TPESRVLDIGAGPGSLAIPLAEMVAHVTAVEPAEGMMEILKQNMETYGTRNIDCVYKDWE
CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
TVDAGSDLCPPYDVVFASYSLGMKDIRASIQKMIDVSSGYVYLYWFAGDTSWDIHSRKLW
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHH
PILHGCEYRQGPKADVLYNVLYDMGIYPNMKVFSFEHNNRFENIEEALEHFKPQYALSSP
HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
EQEEILRSYLLDVLEEENGALVQKGKSTRVKMWWKVSSF
CHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEECCC
>Mature Secondary Structure
MDLKIDWNELWKEKMELQSKTKTNTDCTNMWKSQKSAKRFWDMTQENKGRVEKTLSGMAL
CCCEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEE
TPESRVLDIGAGPGSLAIPLAEMVAHVTAVEPAEGMMEILKQNMETYGTRNIDCVYKDWE
CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
TVDAGSDLCPPYDVVFASYSLGMKDIRASIQKMIDVSSGYVYLYWFAGDTSWDIHSRKLW
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHH
PILHGCEYRQGPKADVLYNVLYDMGIYPNMKVFSFEHNNRFENIEEALEHFKPQYALSSP
HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
EQEEILRSYLLDVLEEENGALVQKGKSTRVKMWWKVSSF
CHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]