| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yjjG [C]
Identifier: 21226414
GI number: 21226414
Start: 416242
End: 417006
Strand: Direct
Name: yjjG [C]
Synonym: MM_0312
Alternate gene names: 21226414
Gene position: 416242-417006 (Clockwise)
Preceding gene: 21226413
Following gene: 21226415
Centisome position: 10.16
GC content: 44.84
Gene sequence:
>765_bases ATGGGAGGCAAGAACATTTCAAGGAATGATGAAGCTGATCCTAAAGGAGGCACTGTCACTTTTCTGGGCGATCCTTTAGA AGCCGGGGAAGATGTATTTGAGAGCTGCCAGATCAAAGGGGTTATTTTTGACTGCTACCAGACGCTTATTGATATCCATA CCGAAGAACACAGAATCGAGACATATGAGACCGTAAGCTCATGGCTTGCCTACCATGGGGTAAAGATTAAGCCGGAAAAG CTCTGGGATACTTACATATTTAAGGTTGAAGAAAGGATGAAAGACTCAAAGGAGATATATCCCGAGATAAGAATTGAAGA AATCTTTGCCGAGATCTGCCAGGAAAACTCTATCTGGAAAATCGACGAAAAAAGCCTGGGAATTGAAACGTCAAGGGTCT TTCGGGCGGCTTCAATCCGAAAGCTGCGCCCCTTCCCTCAGAGCATAAAACTAATCGAGCAGTGCATAAACATCCCAAAG TGCATAATCTCCAACGGGCAAAGGGTCTTTTCCGAACTTGAACTGAGGTTCCTAGGGCTTTATGACTACTTCGATTTTGT AATATTCTCGTCAGATGTGGGATACAAAAAACCCGACCTCAGGCTTTTTATGACCGCCCTTAAAAGGATGGAACTCGAAC TCGAACCCAAATGTGTTATGTCCCTAGGAGACTCTTACGAAAATGAGATCCTTCCGGCGAGAAAGCTCGGGATGCAGGCA ATGACGATTGGAGAAGCCTGGAAACATTTCGGGATAACAGACTGA
Upstream 100 bases:
>100_bases TTATAGAGGGAATTAAGTAAAATAGGAAAGCTTTAAGATAGTAAACGAGATAGGAGACTGAAAGTAAAATCAAAGATATT GAAAACATCACAAGGGGGAC
Downstream 100 bases:
>100_bases ACCGGAATACCTGCCATGCAAAATACTTTTTTAACCCATTTTACCTGATCTCCTGGCTTCCAGGATTCTTTTTTGCCTGC CAGCTTTTTATTGTCTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: HAD Family Hydrolase; Haloacid Dehalogenase; HAD-Superfamily Hydrolase / Phosphatase; HAD-Superfamily Hydrolase; Haloacid Dehalogenase-Like Hydrolase Family Protein; Haloacid Dehalogenase Domain Protein Hydrolase; HAD Superfamily Hydrolase
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MGGKNISRNDEADPKGGTVTFLGDPLEAGEDVFESCQIKGVIFDCYQTLIDIHTEEHRIETYETVSSWLAYHGVKIKPEK LWDTYIFKVEERMKDSKEIYPEIRIEEIFAEICQENSIWKIDEKSLGIETSRVFRAASIRKLRPFPQSIKLIEQCINIPK CIISNGQRVFSELELRFLGLYDYFDFVIFSSDVGYKKPDLRLFMTALKRMELELEPKCVMSLGDSYENEILPARKLGMQA MTIGEAWKHFGITD
Sequences:
>Translated_254_residues MGGKNISRNDEADPKGGTVTFLGDPLEAGEDVFESCQIKGVIFDCYQTLIDIHTEEHRIETYETVSSWLAYHGVKIKPEK LWDTYIFKVEERMKDSKEIYPEIRIEEIFAEICQENSIWKIDEKSLGIETSRVFRAASIRKLRPFPQSIKLIEQCINIPK CIISNGQRVFSELELRFLGLYDYFDFVIFSSDVGYKKPDLRLFMTALKRMELELEPKCVMSLGDSYENEILPARKLGMQA MTIGEAWKHFGITD >Mature_253_residues GGKNISRNDEADPKGGTVTFLGDPLEAGEDVFESCQIKGVIFDCYQTLIDIHTEEHRIETYETVSSWLAYHGVKIKPEKL WDTYIFKVEERMKDSKEIYPEIRIEEIFAEICQENSIWKIDEKSLGIETSRVFRAASIRKLRPFPQSIKLIEQCINIPKC IISNGQRVFSELELRFLGLYDYFDFVIFSSDVGYKKPDLRLFMTALKRMELELEPKCVMSLGDSYENEILPARKLGMQAM TIGEAWKHFGITD
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29404; Mature: 29273
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGKNISRNDEADPKGGTVTFLGDPLEAGEDVFESCQIKGVIFDCYQTLIDIHTEEHRIE CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TYETVSSWLAYHGVKIKPEKLWDTYIFKVEERMKDSKEIYPEIRIEEIFAEICQENSIWK HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE IDEKSLGIETSRVFRAASIRKLRPFPQSIKLIEQCINIPKCIISNGQRVFSELELRFLGL ECCHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH YDYFDFVIFSSDVGYKKPDLRLFMTALKRMELELEPKCVMSLGDSYENEILPARKLGMQA HHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHCCCCHHHHCHHH MTIGEAWKHFGITD HHHHHHHHHCCCCC >Mature Secondary Structure GGKNISRNDEADPKGGTVTFLGDPLEAGEDVFESCQIKGVIFDCYQTLIDIHTEEHRIE CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TYETVSSWLAYHGVKIKPEKLWDTYIFKVEERMKDSKEIYPEIRIEEIFAEICQENSIWK HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE IDEKSLGIETSRVFRAASIRKLRPFPQSIKLIEQCINIPKCIISNGQRVFSELELRFLGL ECCHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH YDYFDFVIFSSDVGYKKPDLRLFMTALKRMELELEPKCVMSLGDSYENEILPARKLGMQA HHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHCCCCHHHHCHHH MTIGEAWKHFGITD HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA