| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226182
Identifier: 21226182
GI number: 21226182
Start: 106128
End: 107258
Strand: Reverse
Name: 21226182
Synonym: MM_0080
Alternate gene names: NA
Gene position: 107258-106128 (Counterclockwise)
Preceding gene: 21226183
Following gene: 21226180
Centisome position: 2.62
GC content: 43.94
Gene sequence:
>1131_bases GTGATTTTGTCGCTCCTTTTAATTTGCTTTACAGACGTATCAGGAGCGAAACCGAGCAGCGGGCATTCAGGAAATACAGG ATTTCCGGACTACACTGAAGGCGCGCAATACGATACTGATTTCGATGCCAGCTTTATGTCGGAATGGTGGTACCAGAATG GGGATATGAGGCTTGTTGGGGAAGATGGAGATGTGAAAAATCTTGCTTTTTTTACCGTACTTGTTCACCAGGAATCTCCA ACGTTTTTTTATGATTCAAAATCAGATACGCAGCTTTCGAATATGGTAACTTTCTATGGGCTTTATCCTTATGGGGAGGA GCCTTCTGACAACTATACCCTGGTTTTTGTGCCGAGGGATGAAATAGAAACCTATATCGGGTTTCATAAGCCATACCTTG ATTTCACTTACCCTGAAGGTTTAAGGAAATTTTACGGTTCGGCGTTTAAAGGATACAATCTGGATTACGCTTACGACAAC GTTCAGTTGGACCTGTTTTTCAAACCTCTCGCAGAAAAAACGATCGACAGTGCAACAGATCCCGTCAATTTTACCACATA CGAATATGCTTATGGAAAACTTCACGGCAGTGTTATGCTTGACGGCAAAAAATATAGAGTTACGCAGGCTGACGGGTACT TTGACCACATGACCCCCTATACAAGGGACCAGCCTGTATGGGAATGGGAGCTTCATGGGTGGAGCTGGTCAGAACTTACA ACTGACAGTTATCAGACTGTGTTCTATGGGGTAAGAGGATCTGATGGGTGTGATGATTATGAATATAAGCACCTGACCCT GATAGACAAAAATAAAGGTAAGGTAATTGCAGAATACTCAGGTGACGAAGTAATCATCAGCGAAAGTGACTGGACAGAAG CGAAAGTCAAAGAGCAGACCGTGGAAAGACCAGCCAGCCTTCAAATATCGGCTCCTGACCTGAATATCTCCATAAATGCA GAAAGTGTTATCCAGCTTGATAGGTCATCTCAGGAAGAGCCTGTGGGATTTGTTGATTTCATGTCTTTCCAGCCCGATGA GGCAACAATTGAGTACAGGGGTGATCTTGAACAGGGAAGCGCCTTCTATGAATATATGGTTTCTGACCGGGTTATTTTCC CGCCGCAGTAA
Upstream 100 bases:
>100_bases CCTCGATTTTTAAAGTCACAGGACGCCTCAAAAACGGGCTTCAATAACAGGAATAAGAAACAGAGGAGAGAGTTATTTGA ACCCGAAGTATCTTAAAATA
Downstream 100 bases:
>100_bases ATACGGTGCAGGTTTACAGAAATAAGGTTCTGAAGGCAAGTTCACATGGTCTTGAATTTTCAGGGGATTTTCCCCCTTTT CATATTTTTGTCCTGAAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MILSLLLICFTDVSGAKPSSGHSGNTGFPDYTEGAQYDTDFDASFMSEWWYQNGDMRLVGEDGDVKNLAFFTVLVHQESP TFFYDSKSDTQLSNMVTFYGLYPYGEEPSDNYTLVFVPRDEIETYIGFHKPYLDFTYPEGLRKFYGSAFKGYNLDYAYDN VQLDLFFKPLAEKTIDSATDPVNFTTYEYAYGKLHGSVMLDGKKYRVTQADGYFDHMTPYTRDQPVWEWELHGWSWSELT TDSYQTVFYGVRGSDGCDDYEYKHLTLIDKNKGKVIAEYSGDEVIISESDWTEAKVKEQTVERPASLQISAPDLNISINA ESVIQLDRSSQEEPVGFVDFMSFQPDEATIEYRGDLEQGSAFYEYMVSDRVIFPPQ
Sequences:
>Translated_376_residues MILSLLLICFTDVSGAKPSSGHSGNTGFPDYTEGAQYDTDFDASFMSEWWYQNGDMRLVGEDGDVKNLAFFTVLVHQESP TFFYDSKSDTQLSNMVTFYGLYPYGEEPSDNYTLVFVPRDEIETYIGFHKPYLDFTYPEGLRKFYGSAFKGYNLDYAYDN VQLDLFFKPLAEKTIDSATDPVNFTTYEYAYGKLHGSVMLDGKKYRVTQADGYFDHMTPYTRDQPVWEWELHGWSWSELT TDSYQTVFYGVRGSDGCDDYEYKHLTLIDKNKGKVIAEYSGDEVIISESDWTEAKVKEQTVERPASLQISAPDLNISINA ESVIQLDRSSQEEPVGFVDFMSFQPDEATIEYRGDLEQGSAFYEYMVSDRVIFPPQ >Mature_376_residues MILSLLLICFTDVSGAKPSSGHSGNTGFPDYTEGAQYDTDFDASFMSEWWYQNGDMRLVGEDGDVKNLAFFTVLVHQESP TFFYDSKSDTQLSNMVTFYGLYPYGEEPSDNYTLVFVPRDEIETYIGFHKPYLDFTYPEGLRKFYGSAFKGYNLDYAYDN VQLDLFFKPLAEKTIDSATDPVNFTTYEYAYGKLHGSVMLDGKKYRVTQADGYFDHMTPYTRDQPVWEWELHGWSWSELT TDSYQTVFYGVRGSDGCDDYEYKHLTLIDKNKGKVIAEYSGDEVIISESDWTEAKVKEQTVERPASLQISAPDLNISINA ESVIQLDRSSQEEPVGFVDFMSFQPDEATIEYRGDLEQGSAFYEYMVSDRVIFPPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43106; Mature: 43106
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILSLLLICFTDVSGAKPSSGHSGNTGFPDYTEGAQYDTDFDASFMSEWWYQNGDMRLVG CHHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE EDGDVKNLAFFTVLVHQESPTFFYDSKSDTQLSNMVTFYGLYPYGEEPSDNYTLVFVPRD CCCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHEEEEEEEECCCCCCCCCEEEEEEEHH EIETYIGFHKPYLDFTYPEGLRKFYGSAFKGYNLDYAYDNVQLDLFFKPLAEKTIDSATD HHHHHHCCCCCCCCCCCHHHHHHHHCCHHCCCCCEEEECCEEEEEEECHHHHHHHHCCCC PVNFTTYEYAYGKLHGSVMLDGKKYRVTQADGYFDHMTPYTRDQPVWEWELHGWSWSELT CCCEEEEEEEEEEEECEEEECCCEEEEEECCCCHHHCCCCCCCCCCEEEEECCEEHHCCC TDSYQTVFYGVRGSDGCDDYEYKHLTLIDKNKGKVIAEYSGDEVIISESDWTEAKVKEQT CCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEECCCEEEEECCCCCHHHHHHHH VERPASLQISAPDLNISINAESVIQLDRSSQEEPVGFVDFMSFQPDEATIEYRGDLEQGS HCCCCEEEEECCCEEEEECHHHEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC AFYEYMVSDRVIFPPQ HHHHHHHCCEEECCCC >Mature Secondary Structure MILSLLLICFTDVSGAKPSSGHSGNTGFPDYTEGAQYDTDFDASFMSEWWYQNGDMRLVG CHHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE EDGDVKNLAFFTVLVHQESPTFFYDSKSDTQLSNMVTFYGLYPYGEEPSDNYTLVFVPRD CCCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHEEEEEEEECCCCCCCCCEEEEEEEHH EIETYIGFHKPYLDFTYPEGLRKFYGSAFKGYNLDYAYDNVQLDLFFKPLAEKTIDSATD HHHHHHCCCCCCCCCCCHHHHHHHHCCHHCCCCCEEEECCEEEEEEECHHHHHHHHCCCC PVNFTTYEYAYGKLHGSVMLDGKKYRVTQADGYFDHMTPYTRDQPVWEWELHGWSWSELT CCCEEEEEEEEEEEECEEEECCCEEEEEECCCCHHHCCCCCCCCCCEEEEECCEEHHCCC TDSYQTVFYGVRGSDGCDDYEYKHLTLIDKNKGKVIAEYSGDEVIISESDWTEAKVKEQT CCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEECCCEEEEECCCCCHHHHHHHH VERPASLQISAPDLNISINAESVIQLDRSSQEEPVGFVDFMSFQPDEATIEYRGDLEQGS HCCCCEEEEECCCEEEEECHHHEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC AFYEYMVSDRVIFPPQ HHHHHHHCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA