| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226183
Identifier: 21226183
GI number: 21226183
Start: 107742
End: 109103
Strand: Reverse
Name: 21226183
Synonym: MM_0081
Alternate gene names: NA
Gene position: 109103-107742 (Counterclockwise)
Preceding gene: 21226184
Following gene: 21226182
Centisome position: 2.66
GC content: 48.68
Gene sequence:
>1362_bases ATGCTTATAAACCCTAAAGAAATCCTGGAGACAATCCAGATGGTCAGGATGGAACATCTGGACATCAGGACCGTTACCAT GGGGATCAGCCTCAGGGACTGCAGCCACCCTGATATTGAGATATTTAACGAAAATATCTACGCGAAAATAACCTCGCGGG CAAAAGACCTTGTCCGGACGACAAATGAAATCCAGAGCCTTTACGGGATCCCTATCATCAACCGCAGGATTTCTGTGACC CCCATAGCGATAGCAGCAGAAAGCTGCAGGTCTCGGGACTTTGTATCTATTGCAAAGACGATGGACGAAGCTGCAAAAGA AGCAGGTGTCGATTTTATCGGCGGGTTCAGTGCCCTTGTCCATAAAGGGGAAACTGGCGGGGACCTGAAATTAATAAATT CCATTCCTGAAGCTCTTGCATCTACAGAAAAGGTCTGCTCGTCCGTTAATGTTGCAACCACAAAGGCGGGAATTAACATG GATGCAGTCGGACTTATGGGAAAAGTAATCAAAAAGACTGCGGAACTGACCTCTGACAGAGATGGGATAGGCTGTGCTAA ACTCGTGGTTTTTGCAAATGCTCCTGATGACAACCCTTTTATGGCAGGAGCTTTTCACGGAATTGGGGAACCCGAATGTG TAATTAATGTGGGCGTAAGCGGGCCTGGCGTGGTTAACGCAGCTGTTTGCGAGCTCGAAAACCCTGACCTCACGGAGATT TCCGAGACAATCAAAAGGACAGCCTTTAAAATTACGCGTATGGGAGAAATGGTCGGAAGAGAGGTCTCAAGAAGGCTCGG CGTTGAATTCGGGATTCTCGACCTTTCGCTTGCTCCAACTCCGGCGATCGGGGACAGTGTTGCAGCAATTCTGGAAGCTA TGGGCCTTGAACGGTGTGGAGCCCATGGCACGACTGCAGCCCTTGCACTTCTTAATGATGCCGTAAAAAAAGGAGGAGCA ATGGCTTCTTCTTCAGTGGGAGGTCTCAGCGGGGCTTTCATTCCTGTAAGTGAAGATGCAGGCATGATTGAAGCGGTAAA AGCCGGAGCTCTCTCTCTTGAAAAACTCGAAGCCATGACCTGTGTCTGTTCAGTCGGGCTTGACATGATAGCAGTCCCGG GAGATACTCCTGCAACTACCCTTTCTGCAATCATTGCTGATGAAATGGCTATAGGGGTAATAAACAAAAAGACAACAGCA GTCAGGGTGATTCCAGCACCCGGAAAAGAAGTTGGGGATTCTGTGGAATTTGGCGGGTTGCTCGGCAGTGCCCCTGTTAT GCCTGTAAGCAATTTCAGTTCAGAAACTTTCATAAAGCGGGGAGGAAGAATTCCGGCTCCTATCCAGTCATTGACAAACT GA
Upstream 100 bases:
>100_bases CCGAAGGCAAAAGCCTTGGAGTTGAGGTCAAAGTTCAGCATGAAGACGCTTTCCGTTTCATGCACAGGATCTGATTTTTC AGGAAGGGAGGATTTTTTTC
Downstream 100 bases:
>100_bases AATATTGTCCTTAAAATTGAATCCACTCTGGCAGGTAGCTCTTCAGTATGTTCTCATGAACCAGCATATTCCGACTTCAT AAGAATATGCTGGTTCAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MLINPKEILETIQMVRMEHLDIRTVTMGISLRDCSHPDIEIFNENIYAKITSRAKDLVRTTNEIQSLYGIPIINRRISVT PIAIAAESCRSRDFVSIAKTMDEAAKEAGVDFIGGFSALVHKGETGGDLKLINSIPEALASTEKVCSSVNVATTKAGINM DAVGLMGKVIKKTAELTSDRDGIGCAKLVVFANAPDDNPFMAGAFHGIGEPECVINVGVSGPGVVNAAVCELENPDLTEI SETIKRTAFKITRMGEMVGREVSRRLGVEFGILDLSLAPTPAIGDSVAAILEAMGLERCGAHGTTAALALLNDAVKKGGA MASSSVGGLSGAFIPVSEDAGMIEAVKAGALSLEKLEAMTCVCSVGLDMIAVPGDTPATTLSAIIADEMAIGVINKKTTA VRVIPAPGKEVGDSVEFGGLLGSAPVMPVSNFSSETFIKRGGRIPAPIQSLTN
Sequences:
>Translated_453_residues MLINPKEILETIQMVRMEHLDIRTVTMGISLRDCSHPDIEIFNENIYAKITSRAKDLVRTTNEIQSLYGIPIINRRISVT PIAIAAESCRSRDFVSIAKTMDEAAKEAGVDFIGGFSALVHKGETGGDLKLINSIPEALASTEKVCSSVNVATTKAGINM DAVGLMGKVIKKTAELTSDRDGIGCAKLVVFANAPDDNPFMAGAFHGIGEPECVINVGVSGPGVVNAAVCELENPDLTEI SETIKRTAFKITRMGEMVGREVSRRLGVEFGILDLSLAPTPAIGDSVAAILEAMGLERCGAHGTTAALALLNDAVKKGGA MASSSVGGLSGAFIPVSEDAGMIEAVKAGALSLEKLEAMTCVCSVGLDMIAVPGDTPATTLSAIIADEMAIGVINKKTTA VRVIPAPGKEVGDSVEFGGLLGSAPVMPVSNFSSETFIKRGGRIPAPIQSLTN >Mature_453_residues MLINPKEILETIQMVRMEHLDIRTVTMGISLRDCSHPDIEIFNENIYAKITSRAKDLVRTTNEIQSLYGIPIINRRISVT PIAIAAESCRSRDFVSIAKTMDEAAKEAGVDFIGGFSALVHKGETGGDLKLINSIPEALASTEKVCSSVNVATTKAGINM DAVGLMGKVIKKTAELTSDRDGIGCAKLVVFANAPDDNPFMAGAFHGIGEPECVINVGVSGPGVVNAAVCELENPDLTEI SETIKRTAFKITRMGEMVGREVSRRLGVEFGILDLSLAPTPAIGDSVAAILEAMGLERCGAHGTTAALALLNDAVKKGGA MASSSVGGLSGAFIPVSEDAGMIEAVKAGALSLEKLEAMTCVCSVGLDMIAVPGDTPATTLSAIIADEMAIGVINKKTTA VRVIPAPGKEVGDSVEFGGLLGSAPVMPVSNFSSETFIKRGGRIPAPIQSLTN
Specific function: Unknown
COG id: COG2848
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0210 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007841 [H]
Pfam domain/function: PF05167 DUF711 [H]
EC number: NA
Molecular weight: Translated: 47240; Mature: 47240
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLINPKEILETIQMVRMEHLDIRTVTMGISLRDCSHPDIEIFNENIYAKITSRAKDLVRT CCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCEEECCCCEEHHHHHHHHHHHH TNEIQSLYGIPIINRRISVTPIAIAAESCRSRDFVSIAKTMDEAAKEAGVDFIGGFSALV HHHHHHHHCCCEECCEEEECCCEEEHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHH HKGETGGDLKLINSIPEALASTEKVCSSVNVATTKAGINMDAVGLMGKVIKKTAELTSDR CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCC DGIGCAKLVVFANAPDDNPFMAGAFHGIGEPECVINVGVSGPGVVNAAVCELENPDLTEI CCCCEEEEEEEECCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEHEEEECCCCCHHHH SETIKRTAFKITRMGEMVGREVSRRLGVEFGILDLSLAPTPAIGDSVAAILEAMGLERCG HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHCHHHCC AHGTTAALALLNDAVKKGGAMASSSVGGLSGAFIPVSEDAGMIEAVKAGALSLEKLEAMT CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHH CVCSVGLDMIAVPGDTPATTLSAIIADEMAIGVINKKTTAVRVIPAPGKEVGDSVEFGGL HHHHCCCCEEEECCCCCHHHHHHHHHHHHHEEEECCCCEEEEEECCCCHHHCCCCHHCCC LGSAPVMPVSNFSSETFIKRGGRIPAPIQSLTN CCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHCC >Mature Secondary Structure MLINPKEILETIQMVRMEHLDIRTVTMGISLRDCSHPDIEIFNENIYAKITSRAKDLVRT CCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCEEECCCCEEHHHHHHHHHHHH TNEIQSLYGIPIINRRISVTPIAIAAESCRSRDFVSIAKTMDEAAKEAGVDFIGGFSALV HHHHHHHHCCCEECCEEEECCCEEEHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHH HKGETGGDLKLINSIPEALASTEKVCSSVNVATTKAGINMDAVGLMGKVIKKTAELTSDR CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCC DGIGCAKLVVFANAPDDNPFMAGAFHGIGEPECVINVGVSGPGVVNAAVCELENPDLTEI CCCCEEEEEEEECCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEHEEEECCCCCHHHH SETIKRTAFKITRMGEMVGREVSRRLGVEFGILDLSLAPTPAIGDSVAAILEAMGLERCG HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHCHHHCC AHGTTAALALLNDAVKKGGAMASSSVGGLSGAFIPVSEDAGMIEAVKAGALSLEKLEAMT CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHH CVCSVGLDMIAVPGDTPATTLSAIIADEMAIGVINKKTTAVRVIPAPGKEVGDSVEFGGL HHHHCCCCEEEECCCCCHHHHHHHHHHHHHEEEECCCCEEEEEECCCCHHHCCCCHHCCC LGSAPVMPVSNFSSETFIKRGGRIPAPIQSLTN CCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]