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The map label for this gene is yocS [H]

Identifier: 21226171

GI number: 21226171

Start: 93523

End: 94458

Strand: Reverse

Name: yocS [H]

Synonym: MM_0069

Alternate gene names: 21226171

Gene position: 94458-93523 (Counterclockwise)

Preceding gene: 21226174

Following gene: 21226170

Centisome position: 2.31

GC content: 45.94

Gene sequence:

>936_bases
ATGCTTAAAAAGTTTACTTCGTTATTTCCCTTATGGGCGGTGCTTCTATCTGCAGTAGCATATTTATATCCTGAATATTT
TGCTCCCCATAATAATCTCATAGTACCTTTTTTAAGCCTGATAATGCTGGGAATGGGAGTTACACTTTCAGTTGACAGTT
TCCTTGAAGTCCTGAAGCGGCCTCATGTGGTTTTACTGGGCACCCTTATGCAGTATACCCTTATGCCTCTTGCTGCATGG
GCAGTCTCCATCGCTTTAAATCTGCCTGCAGACCTTATGGCGGGTGTGATCCTGCTTGGATGCTGTCCGGGTGGCACTGC
TTCAAACGTTATCTGCTACCTTGCAAAAGGCGATGTTGCACTTTCAATAGTGCTTACGTCCGTATCCACCATGATTGCCT
TTCTTGCAACTCCGTTTCTTACCTGGCTCTTTATAGGGCAGACCGTGGAGGTCGACGTTACAGGCATGCTTGTAAGTGTG
ATAAATATCGTAGTTTTACCTGTAGCGCTCGGGCTTGCTATCAATTATTTCTTTGAATCACGAATAAAGGCGGTCAGGGA
CGTTTTTCCTGCCATTTCAGCTGCTGCCATAGTAATAATTATTGCCATAATTATAGGGACAAATAGTGAAAACCTTGAAC
AGAGCGGTCCCTTAGTTCTTCTTGCTGTGATTCTGCATAATGGTCTCGGGCTTGCAGGAGGCTACGGGGCTGCAAAAGCT
CTGAAATTCAGTGAGAAAGAGGCAAGAACCATTGCAATCGAGGTGGGAATGCAGAACTCGGGCCTCAGCGTTGCTCTTGC
GATAAAACATTTCACTGCTGCGGCAGCTCTGCCGGGTGCTATTTTCAGTATCTGGCATAACCTGTCCGGAGCTTTCCTTG
CAGGGCACTGGTCGAAAGAAACAGAATTTGATCGCGATAAACATGAGATCTCCTGA

Upstream 100 bases:

>100_bases
ACAACTTTATTATTTATTGGGAATATATAGATATTTATTTAAATAACAATCTTATTTAGTTTATAACTCAAACGTCTGTT
GATGAGACGGTGTACAAAAA

Downstream 100 bases:

>100_bases
AATAACGGAAATCTCCACCAAGAGGTTGGGGTGAGACCTGAAAAGGTTTCACACTGAGGTAAAAGAACAAGGGTTGGAGA
CAAAAGGAAAAGTTCAGAGG

Product: Sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLKKFTSLFPLWAVLLSAVAYLYPEYFAPHNNLIVPFLSLIMLGMGVTLSVDSFLEVLKRPHVVLLGTLMQYTLMPLAAW
AVSIALNLPADLMAGVILLGCCPGGTASNVICYLAKGDVALSIVLTSVSTMIAFLATPFLTWLFIGQTVEVDVTGMLVSV
INIVVLPVALGLAINYFFESRIKAVRDVFPAISAAAIVIIIAIIIGTNSENLEQSGPLVLLAVILHNGLGLAGGYGAAKA
LKFSEKEARTIAIEVGMQNSGLSVALAIKHFTAAAALPGAIFSIWHNLSGAFLAGHWSKETEFDRDKHEIS

Sequences:

>Translated_311_residues
MLKKFTSLFPLWAVLLSAVAYLYPEYFAPHNNLIVPFLSLIMLGMGVTLSVDSFLEVLKRPHVVLLGTLMQYTLMPLAAW
AVSIALNLPADLMAGVILLGCCPGGTASNVICYLAKGDVALSIVLTSVSTMIAFLATPFLTWLFIGQTVEVDVTGMLVSV
INIVVLPVALGLAINYFFESRIKAVRDVFPAISAAAIVIIIAIIIGTNSENLEQSGPLVLLAVILHNGLGLAGGYGAAKA
LKFSEKEARTIAIEVGMQNSGLSVALAIKHFTAAAALPGAIFSIWHNLSGAFLAGHWSKETEFDRDKHEIS
>Mature_311_residues
MLKKFTSLFPLWAVLLSAVAYLYPEYFAPHNNLIVPFLSLIMLGMGVTLSVDSFLEVLKRPHVVLLGTLMQYTLMPLAAW
AVSIALNLPADLMAGVILLGCCPGGTASNVICYLAKGDVALSIVLTSVSTMIAFLATPFLTWLFIGQTVEVDVTGMLVSV
INIVVLPVALGLAINYFFESRIKAVRDVFPAISAAAIVIIIAIIIGTNSENLEQSGPLVLLAVILHNGLGLAGGYGAAKA
LKFSEKEARTIAIEVGMQNSGLSVALAIKHFTAAAALPGAIFSIWHNLSGAFLAGHWSKETEFDRDKHEIS

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=241, Percent_Identity=29.4605809128631, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI37537552, Length=256, Percent_Identity=24.609375, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI24308414, Length=264, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI58219066, Length=243, Percent_Identity=27.5720164609054, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4506971, Length=243, Percent_Identity=25.9259259259259, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI215422368, Length=229, Percent_Identity=30.5676855895196, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI215422370, Length=229, Percent_Identity=30.5676855895196, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI9790143, Length=229, Percent_Identity=30.5676855895196, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115533076, Length=114, Percent_Identity=32.4561403508772, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18859699, Length=240, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33125; Mature: 33125

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKFTSLFPLWAVLLSAVAYLYPEYFAPHNNLIVPFLSLIMLGMGVTLSVDSFLEVLKR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEECHHHHHHHHCC
PHVVLLGTLMQYTLMPLAAWAVSIALNLPADLMAGVILLGCCPGGTASNVICYLAKGDVA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEE
LSIVLTSVSTMIAFLATPFLTWLFIGQTVEVDVTGMLVSVINIVVLPVALGLAINYFFES
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIKAVRDVFPAISAAAIVIIIAIIIGTNSENLEQSGPLVLLAVILHNGLGLAGGYGAAKA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHH
LKFSEKEARTIAIEVGMQNSGLSVALAIKHFTAAAALPGAIFSIWHNLSGAFLAGHWSKE
HHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
TEFDRDKHEIS
CCCCCHHHCCC
>Mature Secondary Structure
MLKKFTSLFPLWAVLLSAVAYLYPEYFAPHNNLIVPFLSLIMLGMGVTLSVDSFLEVLKR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEECHHHHHHHHCC
PHVVLLGTLMQYTLMPLAAWAVSIALNLPADLMAGVILLGCCPGGTASNVICYLAKGDVA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEE
LSIVLTSVSTMIAFLATPFLTWLFIGQTVEVDVTGMLVSVINIVVLPVALGLAINYFFES
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIKAVRDVFPAISAAAIVIIIAIIIGTNSENLEQSGPLVLLAVILHNGLGLAGGYGAAKA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHH
LKFSEKEARTIAIEVGMQNSGLSVALAIKHFTAAAALPGAIFSIWHNLSGAFLAGHWSKE
HHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
TEFDRDKHEIS
CCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]