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The map label for this gene is Jag [H]

Identifier: 20809126

GI number: 20809126

Start: 2687337

End: 2687957

Strand: Reverse

Name: Jag [H]

Synonym: TTE2798

Alternate gene names: 20809126

Gene position: 2687957-2687337 (Counterclockwise)

Preceding gene: 20809127

Following gene: 20809125

Centisome position: 99.94

GC content: 39.45

Gene sequence:

>621_bases
TTGAAAGAATTAATAAGAACTGGTAAAACAGTGGAGGAGGCCATAAATCTTGCGCTTAAAGATTTTGGCGTCCCGAGAGA
TATGGTAGAAGTGGAAGTGCTGGATGAAGGGGGAAAAGGTTTTCTAGGCCTTATCAGCAAGCAGGCCATTGTAAAAGTAG
TTTTAAAAGACGTGATAAAGGAGTCTGCTAAAAATTTCCTAAAACAGGTAATAGATGCGATGAAACTGGATATCACTTTT
GAAATTGAGGAGACAGAGGATACTATAAAGTTCAATTTGCAAGGCAAGAATGTGGGACTGCTTATAGGAAGAAGAGGAGA
GACATTGGATGCTTTGCAGTACTTAGTAAATGTGGTGGCAAGCAAATACAAAGGGTATGAGAGATACAGAAGGATAATTT
TAGATGCAGGAAATTACAGAAAAAGAAGAGAAGAAACTCTCACTCGACTTGCTAGAAAGCTTGCTAAAAAGGTGATGGAG
ACAAAGGAGAGCATAGAGCTAGAGCCCATGACTCCTAATGAGAGAAGAATAATTCATTTAGCTTTGCAAGACCACCCCTA
TGTGGAGACCTATAGCGAAGGAGAGGAACCCAACAGAAGAGTTATAATTGCTTTGAAATGA

Upstream 100 bases:

>100_bases
GCTGGAGTGGGGATTTATTGGGTTACGAGCAATATATTCCAGATAGTTCAGCAGTATATTTTCATGAGGGAGACCAAAAC
GCTCAAGGGGGAATCCTGAA

Downstream 100 bases:

>100_bases
GCCCTTTTGCGGGGTCTTTTTTATTTTTTCTTGATTGAAAAGATTGAAAAATTGGTATATTATTTTATGTGATTGTGAAG
TTAGCTGAGGCTGGTGATGG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKELIRTGKTVEEAINLALKDFGVPRDMVEVEVLDEGGKGFLGLISKQAIVKVVLKDVIKESAKNFLKQVIDAMKLDITF
EIEETEDTIKFNLQGKNVGLLIGRRGETLDALQYLVNVVASKYKGYERYRRIILDAGNYRKRREETLTRLARKLAKKVME
TKESIELEPMTPNERRIIHLALQDHPYVETYSEGEEPNRRVIIALK

Sequences:

>Translated_206_residues
MKELIRTGKTVEEAINLALKDFGVPRDMVEVEVLDEGGKGFLGLISKQAIVKVVLKDVIKESAKNFLKQVIDAMKLDITF
EIEETEDTIKFNLQGKNVGLLIGRRGETLDALQYLVNVVASKYKGYERYRRIILDAGNYRKRREETLTRLARKLAKKVME
TKESIELEPMTPNERRIIHLALQDHPYVETYSEGEEPNRRVIIALK
>Mature_206_residues
MKELIRTGKTVEEAINLALKDFGVPRDMVEVEVLDEGGKGFLGLISKQAIVKVVLKDVIKESAKNFLKQVIDAMKLDITF
EIEETEDTIKFNLQGKNVGLLIGRRGETLDALQYLVNVVASKYKGYERYRRIILDAGNYRKRREETLTRLARKLAKKVME
TKESIELEPMTPNERRIIHLALQDHPYVETYSEGEEPNRRVIIALK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23660; Mature: 23660

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELIRTGKTVEEAINLALKDFGVPRDMVEVEVLDEGGKGFLGLISKQAIVKVVLKDVIK
CCHHHHCCCHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ESAKNFLKQVIDAMKLDITFEIEETEDTIKFNLQGKNVGLLIGRRGETLDALQYLVNVVA
HHHHHHHHHHHHHHHHCEEEEEECCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHH
SKYKGYERYRRIILDAGNYRKRREETLTRLARKLAKKVMETKESIELEPMTPNERRIIHL
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEE
ALQDHPYVETYSEGEEPNRRVIIALK
EECCCCCEECCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKELIRTGKTVEEAINLALKDFGVPRDMVEVEVLDEGGKGFLGLISKQAIVKVVLKDVIK
CCHHHHCCCHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ESAKNFLKQVIDAMKLDITFEIEETEDTIKFNLQGKNVGLLIGRRGETLDALQYLVNVVA
HHHHHHHHHHHHHHHHCEEEEEECCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHH
SKYKGYERYRRIILDAGNYRKRREETLTRLARKLAKKVMETKESIELEPMTPNERRIIHL
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEE
ALQDHPYVETYSEGEEPNRRVIIALK
EECCCCCEECCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]