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The map label for this gene is UgpB6 [H]

Identifier: 20808778

GI number: 20808778

Start: 2309303

End: 2310610

Strand: Reverse

Name: UgpB6 [H]

Synonym: TTE2417

Alternate gene names: 20808778

Gene position: 2310610-2309303 (Counterclockwise)

Preceding gene: 20808779

Following gene: 20808777

Centisome position: 85.91

GC content: 36.54

Gene sequence:

>1308_bases
ATGGCAAAAAGAATCTCAAAATTAGTTTCCATCTTTATATCTGTTATGTTGATTTTCACATTGATAAGTGGATGTAGTAA
ACCTCAAACAGAACCATCTGCTCAAAAGCAGGGAGAAAAAGTAACTATCACTATCTGGCATTACTTGAATGACAGAGATA
AACTTATGAAAGAATTTGCTCAAGAGTATGAAAAGAAGACAGGAGTTCATGTGGATTTTCAATTATATAGTGGTGACCAA
ATGGGCTCAAAGATTCAAGCAGCAGCTCAAGCAAAGACTTTGCCAGATGCATGGACTGGAGTTGGACTTAAGCCCGCTCT
TTCCAAATTGATAGAAGGAGGATATGTGGCAAAGGTAAATGATTTAATTCCTAATTTTGGCAATTGGCGCAATAAATTTC
CTCAAAATGTACTGGATCAGATAAGCTTTACTCAAGGTGATGGATTTAATGTGCCGCCGGGGACCTATGGAATACCATTG
GATGTAAACAATATGCAGTTTTTATATAACAAAGAATTGTTTAAAAAAGCTGGACTTGATCCCGATAATCCCCCCAAAAC
ATGGAACGAATTTTTGGAATATGGGAAAAAATTAAAAGAAGCGGGTATTACGCCATTTGCTACAGGTATTGGTACTTGGG
TAGGATTTTCACTACTTGAACCCTATGAATGGGCATATTTAGGACCTGATAAATTAAAAGAAGCTAGGGCTGGCCAGATT
ACATTTAAAGAAGCTGGTTTTGAGAAAGTTCTCAATTTACTTGTGGAAATGAGAGATGCAAAAATGTTTGCAGAAGGAGT
AGCGACAATGGATTTGCCAACGGCTGAGCAAATGTTTGTCAATGGTCAAATAGCCATGATATTTGATGGTTCTTGGGCAA
TTGGGGTATTTAATTCGATGAATCCCAACTTTAAAGATTATGGAGTATTTTTCCCACCAAAAGACGATAGAGCATCTTAT
CCCGCATTGATACCGGGTGGTATAGGAGCTTATTTTGTGGTAAATAAAGATTCTAAACACTTAAAAGAAACCGTAGATTT
TTTGGTTTGGTTAACAGAAAAAGATCAGCAAATTAAATACGCTAATGAAAGCTTTAATTTACCAGCTAACAAAGATGCAA
TAGATCCTAACAAATTATTGCCACAAACAGCTGCCTTTGCAAAAGAGATGGATAAAGTTAATCCGGGTATGCCACCTATA
AAAAATCCAAGGGCTGAAGAAGTATTAGGCAAAGGCATACAAATGATAGTAATGGGGCAAAAGACACCTCCTGAGGTTGT
AAAAGAAATGGATGAAGCAAATAAATAA

Upstream 100 bases:

>100_bases
CACCCGCACAGCTAGAAAATAAAGCCACAATGGTGGGTGCTGCGAAATTGATAATTGACTATCTCAGCAAAAATAATTAA
TAAAAGGAGGTTTTTAGAAA

Downstream 100 bases:

>100_bases
AAAATGCCAAGGTATAACCTCATAGGGTGGTTATGCCTTGGCTTTGAAGTGAGGTAATAGAATATGAGAAAAAGCCATGT
TCTATCGCGACTGAGCAATA

Product: sugar-binding periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MAKRISKLVSIFISVMLIFTLISGCSKPQTEPSAQKQGEKVTITIWHYLNDRDKLMKEFAQEYEKKTGVHVDFQLYSGDQ
MGSKIQAAAQAKTLPDAWTGVGLKPALSKLIEGGYVAKVNDLIPNFGNWRNKFPQNVLDQISFTQGDGFNVPPGTYGIPL
DVNNMQFLYNKELFKKAGLDPDNPPKTWNEFLEYGKKLKEAGITPFATGIGTWVGFSLLEPYEWAYLGPDKLKEARAGQI
TFKEAGFEKVLNLLVEMRDAKMFAEGVATMDLPTAEQMFVNGQIAMIFDGSWAIGVFNSMNPNFKDYGVFFPPKDDRASY
PALIPGGIGAYFVVNKDSKHLKETVDFLVWLTEKDQQIKYANESFNLPANKDAIDPNKLLPQTAAFAKEMDKVNPGMPPI
KNPRAEEVLGKGIQMIVMGQKTPPEVVKEMDEANK

Sequences:

>Translated_435_residues
MAKRISKLVSIFISVMLIFTLISGCSKPQTEPSAQKQGEKVTITIWHYLNDRDKLMKEFAQEYEKKTGVHVDFQLYSGDQ
MGSKIQAAAQAKTLPDAWTGVGLKPALSKLIEGGYVAKVNDLIPNFGNWRNKFPQNVLDQISFTQGDGFNVPPGTYGIPL
DVNNMQFLYNKELFKKAGLDPDNPPKTWNEFLEYGKKLKEAGITPFATGIGTWVGFSLLEPYEWAYLGPDKLKEARAGQI
TFKEAGFEKVLNLLVEMRDAKMFAEGVATMDLPTAEQMFVNGQIAMIFDGSWAIGVFNSMNPNFKDYGVFFPPKDDRASY
PALIPGGIGAYFVVNKDSKHLKETVDFLVWLTEKDQQIKYANESFNLPANKDAIDPNKLLPQTAAFAKEMDKVNPGMPPI
KNPRAEEVLGKGIQMIVMGQKTPPEVVKEMDEANK
>Mature_434_residues
AKRISKLVSIFISVMLIFTLISGCSKPQTEPSAQKQGEKVTITIWHYLNDRDKLMKEFAQEYEKKTGVHVDFQLYSGDQM
GSKIQAAAQAKTLPDAWTGVGLKPALSKLIEGGYVAKVNDLIPNFGNWRNKFPQNVLDQISFTQGDGFNVPPGTYGIPLD
VNNMQFLYNKELFKKAGLDPDNPPKTWNEFLEYGKKLKEAGITPFATGIGTWVGFSLLEPYEWAYLGPDKLKEARAGQIT
FKEAGFEKVLNLLVEMRDAKMFAEGVATMDLPTAEQMFVNGQIAMIFDGSWAIGVFNSMNPNFKDYGVFFPPKDDRASYP
ALIPGGIGAYFVVNKDSKHLKETVDFLVWLTEKDQQIKYANESFNLPANKDAIDPNKLLPQTAAFAKEMDKVNPGMPPIK
NPRAEEVLGKGIQMIVMGQKTPPEVVKEMDEANK

Specific function: Probably part of the binding-protein-dependent transport system yurMNO [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=225, Percent_Identity=29.3333333333333, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48548; Mature: 48417

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRISKLVSIFISVMLIFTLISGCSKPQTEPSAQKQGEKVTITIWHYLNDRDKLMKEFA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEEEEECCCHHHHHHHHH
QEYEKKTGVHVDFQLYSGDQMGSKIQAAAQAKTLPDAWTGVGLKPALSKLIEGGYVAKVN
HHHHHHCCCEEEEEEECCCHHCHHHHHHHHHCCCCCHHCCCCCHHHHHHHHCCCCEEEHH
DLIPNFGNWRNKFPQNVLDQISFTQGDGFNVPPGTYGIPLDVNNMQFLYNKELFKKAGLD
HHCCCCCCHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCC
PDNPPKTWNEFLEYGKKLKEAGITPFATGIGTWVGFSLLEPYEWAYLGPDKLKEARAGQI
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCE
TFKEAGFEKVLNLLVEMRDAKMFAEGVATMDLPTAEQMFVNGQIAMIFDGSWAIGVFNSM
EHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHEECCEEEEEECCCEEEEEECCC
NPNFKDYGVFFPPKDDRASYPALIPGGIGAYFVVNKDSKHLKETVDFLVWLTEKDQQIKY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHEEECCCCCEEEE
ANESFNLPANKDAIDPNKLLPQTAAFAKEMDKVNPGMPPIKNPRAEEVLGKGIQMIVMGQ
CCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECC
KTPPEVVKEMDEANK
CCCHHHHHHHHHCCC
>Mature Secondary Structure 
AKRISKLVSIFISVMLIFTLISGCSKPQTEPSAQKQGEKVTITIWHYLNDRDKLMKEFA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEEEEECCCHHHHHHHHH
QEYEKKTGVHVDFQLYSGDQMGSKIQAAAQAKTLPDAWTGVGLKPALSKLIEGGYVAKVN
HHHHHHCCCEEEEEEECCCHHCHHHHHHHHHCCCCCHHCCCCCHHHHHHHHCCCCEEEHH
DLIPNFGNWRNKFPQNVLDQISFTQGDGFNVPPGTYGIPLDVNNMQFLYNKELFKKAGLD
HHCCCCCCHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCC
PDNPPKTWNEFLEYGKKLKEAGITPFATGIGTWVGFSLLEPYEWAYLGPDKLKEARAGQI
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCE
TFKEAGFEKVLNLLVEMRDAKMFAEGVATMDLPTAEQMFVNGQIAMIFDGSWAIGVFNSM
EHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHEECCEEEEEECCCEEEEEECCC
NPNFKDYGVFFPPKDDRASYPALIPGGIGAYFVVNKDSKHLKETVDFLVWLTEKDQQIKY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHEEECCCCCEEEE
ANESFNLPANKDAIDPNKLLPQTAAFAKEMDKVNPGMPPIKNPRAEEVLGKGIQMIVMGQ
CCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECC
KTPPEVVKEMDEANK
CCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]