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The map label for this gene is NagC3 [H]

Identifier: 20808330

GI number: 20808330

Start: 1863834

End: 1865024

Strand: Reverse

Name: NagC3 [H]

Synonym: TTE1926

Alternate gene names: 20808330

Gene position: 1865024-1863834 (Counterclockwise)

Preceding gene: 20808331

Following gene: 20808329

Centisome position: 69.35

GC content: 38.62

Gene sequence:

>1191_bases
ATGGAAAATTTAATACCAGTAAGTTACAAGCTACTAAAAGGAATGAATGAGTCTGTCATATTAAATATTATACGAAAAAT
GGGGCCGATTTCCCGAGCAGATATTGCAAAGGAGACTAATTTAACTCCTCCAACTGTTACAAATATTGTAAATAAACTTC
TGGCAGATAATGTGGTGATAGAGTACAAGGTTGGGGAATCCAGTGGAGGGAGGCCTCCAATACTTATTAAATTAAACCCG
GATTTCATGAATATTATTGTAATTCACATAAGCACTTACACTTTGCACCAGTATACTCTTGATGCAGAGCTTAACACAAA
GAAGAGCGAAAAACACTCAATAAAAGGGCTAAAAAAAGAAGAAGTCTTAGATTTACTATTGTCTACATTAGAGAAAGCGA
TAAAAGAGGCGCCTCAAAATGTTTCAGGGATAGGGATTGTGGTAAGAGGTCCTGTAAAGATGAAAGAAGGTATATCAGTT
TTTGCGCCCAATATAGGTTGGAGAAATATGCCATTAAAGTCAATTGTAGAAGAGAAATTTGGAATACCTACCTATATTGT
AAATGACGTGAGAGCAATGGCTTTAGGGGAATTTCATATGGGGAAGGCAAAAGATGTGGTGAACATGATATTTTTAAAAG
TCGGTTACGGAATAGGTTCTGCAATTCTCATAAACGGCAGGATATACACTGGCGCCAGTGACAGTGCAGGTGAAATAGGG
CATACGACAATTGACGTAGCAGGACCTCAGTGCAGCTGCGGCAATTATGGCTGCTTTGAAGCTTTGGCGTCTGAAAAGGC
GTTGGTCAATTTTGTTGTAAAAGCGATCAAAGAAGGAACGGATTCTATTGTGTACCAAATGGCAGAGGGAATGCTGGATA
GTGTTACTCCTGAAATGATATATGAAGCTGCCAAATTAAACGATGACTTGGCTGTATCTACATTGAGGATAATAGGGAGA
TACTTAGGCATAGGCATAGCAAATATAATAAATACATTTAACCCTGAATTAATACTTATAGGAGGTGGAATTGTACAGGG
ACGCGAGTTCTTTGAAGACATAATGAGAGAAACAGCCAAAAAGAGGGCTTTTGAAAGTGCTTTTAATGCGTGTTCTATAG
CTTTTTCTGAGCTTGGGCCCAACGCTACGCTAATAGGAGCTGCTAATCTTGTGATGGACGAAGTACTATGA

Upstream 100 bases:

>100_bases
GGCCTAAATATGCTTCTTTAGAAGAGATAATTAAAAGTGCCTGGATGTGGCATAAAAACCATCCAAATGGCTTTAAAAGG
GATTGAAGGAAGGGATGGAA

Downstream 100 bases:

>100_bases
AAGCACTGTAACAGGAAGGAGGAGGAATATGTCAGTAAAAATTGAAAAAATAAACTTTTCTGGATGGGAGAACAGCATAA
GACTTTCAAATGGCATTATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLLADNVVIEYKVGESSGGRPPILIKLNP
DFMNIIVIHISTYTLHQYTLDAELNTKKSEKHSIKGLKKEEVLDLLLSTLEKAIKEAPQNVSGIGIVVRGPVKMKEGISV
FAPNIGWRNMPLKSIVEEKFGIPTYIVNDVRAMALGEFHMGKAKDVVNMIFLKVGYGIGSAILINGRIYTGASDSAGEIG
HTTIDVAGPQCSCGNYGCFEALASEKALVNFVVKAIKEGTDSIVYQMAEGMLDSVTPEMIYEAAKLNDDLAVSTLRIIGR
YLGIGIANIINTFNPELILIGGGIVQGREFFEDIMRETAKKRAFESAFNACSIAFSELGPNATLIGAANLVMDEVL

Sequences:

>Translated_396_residues
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLLADNVVIEYKVGESSGGRPPILIKLNP
DFMNIIVIHISTYTLHQYTLDAELNTKKSEKHSIKGLKKEEVLDLLLSTLEKAIKEAPQNVSGIGIVVRGPVKMKEGISV
FAPNIGWRNMPLKSIVEEKFGIPTYIVNDVRAMALGEFHMGKAKDVVNMIFLKVGYGIGSAILINGRIYTGASDSAGEIG
HTTIDVAGPQCSCGNYGCFEALASEKALVNFVVKAIKEGTDSIVYQMAEGMLDSVTPEMIYEAAKLNDDLAVSTLRIIGR
YLGIGIANIINTFNPELILIGGGIVQGREFFEDIMRETAKKRAFESAFNACSIAFSELGPNATLIGAANLVMDEVL
>Mature_396_residues
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLLADNVVIEYKVGESSGGRPPILIKLNP
DFMNIIVIHISTYTLHQYTLDAELNTKKSEKHSIKGLKKEEVLDLLLSTLEKAIKEAPQNVSGIGIVVRGPVKMKEGISV
FAPNIGWRNMPLKSIVEEKFGIPTYIVNDVRAMALGEFHMGKAKDVVNMIFLKVGYGIGSAILINGRIYTGASDSAGEIG
HTTIDVAGPQCSCGNYGCFEALASEKALVNFVVKAIKEGTDSIVYQMAEGMLDSVTPEMIYEAAKLNDDLAVSTLRIIGR
YLGIGIANIINTFNPELILIGGGIVQGREFFEDIMRETAKKRAFESAFNACSIAFSELGPNATLIGAANLVMDEVL

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=279, Percent_Identity=30.4659498207885, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI298566315, Length=279, Percent_Identity=30.4659498207885, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI4885285, Length=279, Percent_Identity=30.4659498207885, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI190014632, Length=279, Percent_Identity=30.4659498207885, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI298566312, Length=163, Percent_Identity=32.5153374233129, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI1786891, Length=389, Percent_Identity=28.7917737789203, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1787878, Length=389, Percent_Identity=24.6786632390745, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87082127, Length=398, Percent_Identity=22.8643216080402, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082230, Length=263, Percent_Identity=25.8555133079848, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42980; Mature: 42980

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLLADNVVI
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCEEE
EYKVGESSGGRPPILIKLNPDFMNIIVIHISTYTLHQYTLDAELNTKKSEKHSIKGLKKE
EEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHCCCCHH
EVLDLLLSTLEKAIKEAPQNVSGIGIVVRGPVKMKEGISVFAPNIGWRNMPLKSIVEEKF
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCEEEECCCCCCCCCHHHHHHHHC
GIPTYIVNDVRAMALGEFHMGKAKDVVNMIFLKVGYGIGSAILINGRIYTGASDSAGEIG
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCC
HTTIDVAGPQCSCGNYGCFEALASEKALVNFVVKAIKEGTDSIVYQMAEGMLDSVTPEMI
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHH
YEAAKLNDDLAVSTLRIIGRYLGIGIANIINTFNPELILIGGGIVQGREFFEDIMRETAK
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH
KRAFESAFNACSIAFSELGPNATLIGAANLVMDEVL
HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCC
>Mature Secondary Structure
MENLIPVSYKLLKGMNESVILNIIRKMGPISRADIAKETNLTPPTVTNIVNKLLADNVVI
CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCEEE
EYKVGESSGGRPPILIKLNPDFMNIIVIHISTYTLHQYTLDAELNTKKSEKHSIKGLKKE
EEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHCCCCHH
EVLDLLLSTLEKAIKEAPQNVSGIGIVVRGPVKMKEGISVFAPNIGWRNMPLKSIVEEKF
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCEEEECCCCCCCCCHHHHHHHHC
GIPTYIVNDVRAMALGEFHMGKAKDVVNMIFLKVGYGIGSAILINGRIYTGASDSAGEIG
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCC
HTTIDVAGPQCSCGNYGCFEALASEKALVNFVVKAIKEGTDSIVYQMAEGMLDSVTPEMI
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHH
YEAAKLNDDLAVSTLRIIGRYLGIGIANIINTFNPELILIGGGIVQGREFFEDIMRETAK
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH
KRAFESAFNACSIAFSELGPNATLIGAANLVMDEVL
HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]