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The map label for this gene is HybA [H]

Identifier: 20808132

GI number: 20808132

Start: 1656164

End: 1656649

Strand: Reverse

Name: HybA [H]

Synonym: TTE1707

Alternate gene names: 20808132

Gene position: 1656649-1656164 (Counterclockwise)

Preceding gene: 20808133

Following gene: 20808131

Centisome position: 61.6

GC content: 57.41

Gene sequence:

>486_bases
ATGATACGGAGAGAGATCTTCGTCCGTTATGATCGATGTGTAGGCTGCCATTCCTGTGAGCTGGCCTGCGCCATAAGCCA
TACCGCGGCCCGAGACTTGTTTGGGGCCATCTTGGGAGGCGAAAAGGCACAGAAGCTCCTATGGGTAGACCAGGTAGGTC
CAGTGAAAGCGCCGGCCGTCTGCCGGCATTGTGAAGACGCCCCGTGCGTGGCGGTCTGCCCAACGGGGGCCATGCACAGG
CGGGAGGATGGCCTCAACCTGGTTAATTTGCCCCAGTGCATTGGTTGCTGGATGTGCGCCTTGGCCTGCCCCTTCGGGGC
GGTGAGCCGGGGCGATGGCAAAGCTATAAAGTGCGATCGGGAGTGCTTGGATGAGGAAGGTGTGCCAGCCTGCGTTCGAG
CATGCCCCACTGGTGCCTTGGTTTTTAAGACTGTAGAAGAATTTGAAGCTGACCGGCGTCGTGAAGTTGTTACTTCATTA
AAATAA

Upstream 100 bases:

>100_bases
TCGTGGACCTAGACCCCGAGTCCGCGGCCGAAAAGCTCCTGGCGGCCATTGACGAGCGCAGGGCTGCTCTGGGGCTCAGC
GTTCCGGGAGGTGGGCGGCG

Downstream 100 bases:

>100_bases
TATCCTTATAAAGGAAGGTAGAAAGACTACTTTTCTACCTTCCTTTATCAAAATCGTCTTCCAACTAATAGAAAGTTAGA
AAATAAAAAATTAAACAAGT

Product: Fe-S-cluster-containing hydrogenase components 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGPVKAPAVCRHCEDAPCVAVCPTGAMHR
REDGLNLVNLPQCIGCWMCALACPFGAVSRGDGKAIKCDRECLDEEGVPACVRACPTGALVFKTVEEFEADRRREVVTSL
K

Sequences:

>Translated_161_residues
MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGPVKAPAVCRHCEDAPCVAVCPTGAMHR
REDGLNLVNLPQCIGCWMCALACPFGAVSRGDGKAIKCDRECLDEEGVPACVRACPTGALVFKTVEEFEADRRREVVTSL
K
>Mature_161_residues
MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGPVKAPAVCRHCEDAPCVAVCPTGAMHR
REDGLNLVNLPQCIGCWMCALACPFGAVSRGDGKAIKCDRECLDEEGVPACVRACPTGALVFKTVEEFEADRRREVVTSL
K

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367245, Length=158, Percent_Identity=41.7721518987342, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1787122, Length=153, Percent_Identity=37.9084967320261, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87082179, Length=164, Percent_Identity=35.9756097560976, Blast_Score=98, Evalue=2e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=36.8421052631579, Blast_Score=96, Evalue=8e-22,
Organism=Escherichia coli, GI1789067, Length=172, Percent_Identity=35.4651162790698, Blast_Score=94, Evalue=4e-21,
Organism=Escherichia coli, GI87082180, Length=147, Percent_Identity=36.734693877551, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788811, Length=152, Percent_Identity=36.8421052631579, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1789079, Length=194, Percent_Identity=31.9587628865979, Blast_Score=83, Evalue=9e-18,
Organism=Escherichia coli, GI87082114, Length=182, Percent_Identity=31.8681318681319, Blast_Score=80, Evalue=6e-17,
Organism=Escherichia coli, GI226510944, Length=152, Percent_Identity=36.8421052631579, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI2367345, Length=97, Percent_Identity=40.2061855670103, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787749, Length=169, Percent_Identity=30.1775147928994, Blast_Score=66, Evalue=9e-13,
Organism=Escherichia coli, GI1790326, Length=165, Percent_Identity=30.9090909090909, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789370, Length=108, Percent_Identity=36.1111111111111, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 17510; Mature: 17510

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
11.8 %Cys+Met (Translated Protein)
9.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
11.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGPVKAPAV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCHHHH
CRHCEDAPCVAVCPTGAMHRREDGLNLVNLPQCIGCWMCALACPFGAVSRGDGKAIKCDR
HHCCCCCCEEEECCCCCCHHHCCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCCEEECCH
ECLDEEGVPACVRACPTGALVFKTVEEFEADRRREVVTSLK
HHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGPVKAPAV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCHHHH
CRHCEDAPCVAVCPTGAMHRREDGLNLVNLPQCIGCWMCALACPFGAVSRGDGKAIKCDR
HHCCCCCCEEEECCCCCCHHHCCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCCEEECCH
ECLDEEGVPACVRACPTGALVFKTVEEFEADRRREVVTSLK
HHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]