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The map label for this gene is yloA [H]

Identifier: 20807959

GI number: 20807959

Start: 1481288

End: 1483000

Strand: Direct

Name: yloA [H]

Synonym: TTE1517

Alternate gene names: 20807959

Gene position: 1481288-1483000 (Clockwise)

Preceding gene: 20807938

Following gene: 20807961

Centisome position: 55.08

GC content: 33.92

Gene sequence:

>1713_bases
ATGGCATTTGATGGAGTAACTTTACATGCAATAGTAAAAGAGCTCAAAAAGGAAATTGAGGGAGGCAGAATTGAAAAAAT
CTATCAGCCTGAAAAAGAAGACTTGATTTTTACAATCCGGTCAAAAGGCAAAAACTATAAACTCCTATTATCTGCCAATG
CCAATTACCCTAGAATTCACCTTACAAAAGAAGATAGAGAAAACCCCCTAGAACCTCCTATGTTTTGTATGCTTTTAAGA
AAACACCTCCAAAACGGAAGAATAGCGGAAATAAGGCAAGTGGAATTTGATAGAATAGTAGAAATTGATATAGAAACAAA
AGATGAACTTCAAAACCAAGCGATCAAAACGCTAGTCGTTGAAATAATGGGAAGGCATAGCAATGTGATACTAATAGATA
AGGCAAGCCAAACAATCCTTGACAGCATAAAAAGGGTTTATCCCGATATGAGCAAGGTAAGAGAAGTGTTGCCCGGCAAA
AAATACACCTATCCTCCCTTGCAGCAAAAATTGAGTTTAAAAGACCTCACTTATGAATCTTTTAAAGAAGCCTTGTTGCG
TCAAAAAACAAAGAAAATAGAAAAGGCTTTAGTGGAAATATTGCAGGGCTTCAGCACCACGCTAAGTAGTGAAGTTTCTT
TTCAGTGCAGTATTTCAGATTCATTTGTAGAAACTTTGGGAGAAGAAAAAATTGAACAAATTTATCAGAAAGTAAGAGAT
ATATATGAAAAAGTCTATAATTTAGAAGTTAAGCCCTGTGTCGTTTTTTTAGAAGACAAAGTAGCTGATTTTTCTTGTAT
TGAACTCACTCAGTACAAGAAAAGACTTCTATTTGACACAGTAAATGAAGCTGCTGATAAGTTTTTCTTTGAAAAAATAA
AATCGGCAAATTTTCAAATGAAATCCTCTGACCTGAAAAAAATTGTACAAAATATTCTGGAAAAGCTTTATGTCAAATTA
AATAAGTTGCAGGAAGAATTAGCTGAAGCGGATAAGGCAGAAATTTACAAATTATACGGTGAGCTTCTTACTGTAAACCT
GCATTCCATCAAGAAAGGATTAGAGAAATTTGGAACTATTAATTATTACACTGGTGAAGAAATAGAAATCCCGCTGGACA
AAAGGCTTTCTCCTTCTCAAAATGCTCAAATGTACTACAAAAAGTACAACAAACTGAAAAACGCTTTTAACACAATTAAA
AAACAAATTTCTGAGACATTAGAAGAGATAAACTACTTAGAGGGGCAGCTCATTAACATAGAAAATTCTACAACTCTTGA
GGAGTTAGAGGAAATAAAAAATGAACTGATAGAAGAAGGATATATACACAAACATCAAAAGAAAAAAGTAGCATCTCATT
CTCTTTCTCAGCCACTTCATATAGTATCCTCTGAAGGTTTTGACATATATGTAGGTAAAAACAATAGACAAAATGATTAT
TTAACCTTAAAGTTGGCCAATCCAAACGACATATGGCTTCACACAAAAGACATCCCAGGAGCACATGTACTGATAAAGAC
TAACAATAGAGAAGTCCCTGAGAATACTCTAATTGAAGCAGCAAAATTAGCAGCAAAATACAGCAAAGCAAAATACTCTT
CCAATGTTCCAGTGGATTATACCTTAAAAAAGTATGTAAAAAAACCCCCAGGTTCAAAACCGGGGTTTGTAATTTACACT
AACCACAAAACCATCTACGTAAATCCTGAGTGA

Upstream 100 bases:

>100_bases
TTATTTTAATTGTAACAGCTGTTACAATTAAAGTCAATATTGTACAATTTCTTTTTGTAAGTTATACTCTAAGTGTAGAC
GAAAAACTGGAGGTATGCCT

Downstream 100 bases:

>100_bases
GCTCATTTAAGGGGCACAGTGAAAACTGGTATGTATTTTCTTTTGCCCTCAATAACAGCGCTTTCATAAAGAGATATCTC
CTTTACAGGGATATCCTTTT

Product: RNA-binding protein snRNP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MAFDGVTLHAIVKELKKEIEGGRIEKIYQPEKEDLIFTIRSKGKNYKLLLSANANYPRIHLTKEDRENPLEPPMFCMLLR
KHLQNGRIAEIRQVEFDRIVEIDIETKDELQNQAIKTLVVEIMGRHSNVILIDKASQTILDSIKRVYPDMSKVREVLPGK
KYTYPPLQQKLSLKDLTYESFKEALLRQKTKKIEKALVEILQGFSTTLSSEVSFQCSISDSFVETLGEEKIEQIYQKVRD
IYEKVYNLEVKPCVVFLEDKVADFSCIELTQYKKRLLFDTVNEAADKFFFEKIKSANFQMKSSDLKKIVQNILEKLYVKL
NKLQEELAEADKAEIYKLYGELLTVNLHSIKKGLEKFGTINYYTGEEIEIPLDKRLSPSQNAQMYYKKYNKLKNAFNTIK
KQISETLEEINYLEGQLINIENSTTLEELEEIKNELIEEGYIHKHQKKKVASHSLSQPLHIVSSEGFDIYVGKNNRQNDY
LTLKLANPNDIWLHTKDIPGAHVLIKTNNREVPENTLIEAAKLAAKYSKAKYSSNVPVDYTLKKYVKKPPGSKPGFVIYT
NHKTIYVNPE

Sequences:

>Translated_570_residues
MAFDGVTLHAIVKELKKEIEGGRIEKIYQPEKEDLIFTIRSKGKNYKLLLSANANYPRIHLTKEDRENPLEPPMFCMLLR
KHLQNGRIAEIRQVEFDRIVEIDIETKDELQNQAIKTLVVEIMGRHSNVILIDKASQTILDSIKRVYPDMSKVREVLPGK
KYTYPPLQQKLSLKDLTYESFKEALLRQKTKKIEKALVEILQGFSTTLSSEVSFQCSISDSFVETLGEEKIEQIYQKVRD
IYEKVYNLEVKPCVVFLEDKVADFSCIELTQYKKRLLFDTVNEAADKFFFEKIKSANFQMKSSDLKKIVQNILEKLYVKL
NKLQEELAEADKAEIYKLYGELLTVNLHSIKKGLEKFGTINYYTGEEIEIPLDKRLSPSQNAQMYYKKYNKLKNAFNTIK
KQISETLEEINYLEGQLINIENSTTLEELEEIKNELIEEGYIHKHQKKKVASHSLSQPLHIVSSEGFDIYVGKNNRQNDY
LTLKLANPNDIWLHTKDIPGAHVLIKTNNREVPENTLIEAAKLAAKYSKAKYSSNVPVDYTLKKYVKKPPGSKPGFVIYT
NHKTIYVNPE
>Mature_569_residues
AFDGVTLHAIVKELKKEIEGGRIEKIYQPEKEDLIFTIRSKGKNYKLLLSANANYPRIHLTKEDRENPLEPPMFCMLLRK
HLQNGRIAEIRQVEFDRIVEIDIETKDELQNQAIKTLVVEIMGRHSNVILIDKASQTILDSIKRVYPDMSKVREVLPGKK
YTYPPLQQKLSLKDLTYESFKEALLRQKTKKIEKALVEILQGFSTTLSSEVSFQCSISDSFVETLGEEKIEQIYQKVRDI
YEKVYNLEVKPCVVFLEDKVADFSCIELTQYKKRLLFDTVNEAADKFFFEKIKSANFQMKSSDLKKIVQNILEKLYVKLN
KLQEELAEADKAEIYKLYGELLTVNLHSIKKGLEKFGTINYYTGEEIEIPLDKRLSPSQNAQMYYKKYNKLKNAFNTIKK
QISETLEEINYLEGQLINIENSTTLEELEEIKNELIEEGYIHKHQKKKVASHSLSQPLHIVSSEGFDIYVGKNNRQNDYL
TLKLANPNDIWLHTKDIPGAHVLIKTNNREVPENTLIEAAKLAAKYSKAKYSSNVPVDYTLKKYVKKPPGSKPGFVIYTN
HKTIYVNPE

Specific function: Unknown

COG id: COG1293

COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDCCAG1 family [H]

Homologues:

Organism=Homo sapiens, GI32130516, Length=379, Percent_Identity=23.4828496042216, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI32565397, Length=597, Percent_Identity=24.4556113902848, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008532
- InterPro:   IPR008616 [H]

Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]

EC number: NA

Molecular weight: Translated: 66009; Mature: 65878

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDGVTLHAIVKELKKEIEGGRIEKIYQPEKEDLIFTIRSKGKNYKLLLSANANYPRIH
CCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEE
LTKEDRENPLEPPMFCMLLRKHLQNGRIAEIRQVEFDRIVEIDIETKDELQNQAIKTLVV
EECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH
EIMGRHSNVILIDKASQTILDSIKRVYPDMSKVREVLPGKKYTYPPLQQKLSLKDLTYES
HHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHCCHHHCCHHH
FKEALLRQKTKKIEKALVEILQGFSTTLSSEVSFQCSISDSFVETLGEEKIEQIYQKVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
IYEKVYNLEVKPCVVFLEDKVADFSCIELTQYKKRLLFDTVNEAADKFFFEKIKSANFQM
HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
KSSDLKKIVQNILEKLYVKLNKLQEELAEADKAEIYKLYGELLTVNLHSIKKGLEKFGTI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
NYYTGEEIEIPLDKRLSPSQNAQMYYKKYNKLKNAFNTIKKQISETLEEINYLEGQLINI
EEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
ENSTTLEELEEIKNELIEEGYIHKHQKKKVASHSLSQPLHIVSSEGFDIYVGKNNRQNDY
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCE
LTLKLANPNDIWLHTKDIPGAHVLIKTNNREVPENTLIEAAKLAAKYSKAKYSSNVPVDY
EEEEECCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
TLKKYVKKPPGSKPGFVIYTNHKTIYVNPE
HHHHHHCCCCCCCCCEEEEECCEEEEECCC
>Mature Secondary Structure 
AFDGVTLHAIVKELKKEIEGGRIEKIYQPEKEDLIFTIRSKGKNYKLLLSANANYPRIH
CCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEE
LTKEDRENPLEPPMFCMLLRKHLQNGRIAEIRQVEFDRIVEIDIETKDELQNQAIKTLVV
EECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH
EIMGRHSNVILIDKASQTILDSIKRVYPDMSKVREVLPGKKYTYPPLQQKLSLKDLTYES
HHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHCCHHHCCHHH
FKEALLRQKTKKIEKALVEILQGFSTTLSSEVSFQCSISDSFVETLGEEKIEQIYQKVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
IYEKVYNLEVKPCVVFLEDKVADFSCIELTQYKKRLLFDTVNEAADKFFFEKIKSANFQM
HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
KSSDLKKIVQNILEKLYVKLNKLQEELAEADKAEIYKLYGELLTVNLHSIKKGLEKFGTI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
NYYTGEEIEIPLDKRLSPSQNAQMYYKKYNKLKNAFNTIKKQISETLEEINYLEGQLINI
EEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
ENSTTLEELEEIKNELIEEGYIHKHQKKKVASHSLSQPLHIVSSEGFDIYVGKNNRQNDY
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCE
LTLKLANPNDIWLHTKDIPGAHVLIKTNNREVPENTLIEAAKLAAKYSKAKYSSNVPVDY
EEEEECCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
TLKKYVKKPPGSKPGFVIYTNHKTIYVNPE
HHHHHHCCCCCCCCCEEEEECCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9534248 [H]