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The map label for this gene is rpmB

Identifier: 20807938

GI number: 20807938

Start: 1462501

End: 1462689

Strand: Direct

Name: rpmB

Synonym: TTE1495

Alternate gene names: 20807938

Gene position: 1462501-1462689 (Clockwise)

Preceding gene: 20807928

Following gene: 20807959

Centisome position: 54.38

GC content: 42.33

Gene sequence:

>189_bases
ATGCCCAAATGCGATATCTGCGGCAAAGGCTCTATAAGGGGATTTCAATACAGTCACTCCAACAGAAGGACTATAAGAAG
GTGGAAGCCCAACATAAGAAAAGTAAGAGCTATTGTGGATGGCACCCATGTGACATTAAATGTTTGCGCAAAATGCCTGA
AGGCAGGAAAAGTTCAAAGGGCTTTATAA

Upstream 100 bases:

>100_bases
ATCAACCAAATTATCAAAGAAGGTATTTACATTTGAGCAAGATGATGATAAAATGGTATTGTTGCGAAAAAATACGCATC
TTAAAAGGAGGTAGTCGACA

Downstream 100 bases:

>100_bases
AGAAAGACGTGCATTTTTGCACGCTTTTATTTTTTTACTTAAAATATATGTTCACATAGTAACCTGCTATTACAAGAAAA
ATCCCCAATAAAACCATCCA

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 61

Protein sequence:

>62_residues
MPKCDICGKGSIRGFQYSHSNRRTIRRWKPNIRKVRAIVDGTHVTLNVCAKCLKAGKVQRAL

Sequences:

>Translated_62_residues
MPKCDICGKGSIRGFQYSHSNRRTIRRWKPNIRKVRAIVDGTHVTLNVCAKCLKAGKVQRAL
>Mature_61_residues
PKCDICGKGSIRGFQYSHSNRRTIRRWKPNIRKVRAIVDGTHVTLNVCAKCLKAGKVQRAL

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_THETN (Q8R9U1)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_623109.1
- ProteinModelPortal:   Q8R9U1
- SMR:   Q8R9U1
- GeneID:   997183
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1495
- NMPDR:   fig|273068.3.peg.1456
- HOGENOM:   HBG597003
- OMA:   TRCLRSN
- ProtClustDB:   PRK00359
- BioCyc:   TTEN273068:TTE1495-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 7037; Mature: 6906

Theoretical pI: Translated: 11.63; Mature: 11.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
6.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKCDICGKGSIRGFQYSHSNRRTIRRWKPNIRKVRAIVDGTHVTLNVCAKCLKAGKVQR
CCCCCCCCCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
AL
CC
>Mature Secondary Structure 
PKCDICGKGSIRGFQYSHSNRRTIRRWKPNIRKVRAIVDGTHVTLNVCAKCLKAGKVQR
CCCCCCCCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
AL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336