Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 20807903

GI number: 20807903

Start: 1430857

End: 1431690

Strand: Reverse

Name: rbgA [H]

Synonym: TTE1456

Alternate gene names: 20807903

Gene position: 1431690-1430857 (Counterclockwise)

Preceding gene: 20807904

Following gene: 20807902

Centisome position: 53.23

GC content: 36.45

Gene sequence:

>834_bases
ATGATACAGTGGTATCCAGGTCACATGGCAAAAGCCAAAAAGGAGATTATCTCCAACTTAAAATTGGTGGATGTGGTATA
TGAGATTGTCGATGCTAGAATTCCTAGAAGCAGCAGAAACCCTGATTTTGATGAAATAACCAAGAGAAAAAAGAAGATAA
TGCTTCTTAACAAAGAAGATTTGGCGGATGAAAGGATAACAGACCTTTGGATAAAGCACTTTAAAGAAAAAGGCATAGAA
GCTGTAAAAGTAAATGCTATAACGGGAAAGGGTTTTAAGGAATTAGAAGAAAAGACTAAAGAAGTTTGCAAAGATATTCT
AGAGGCAAAGGTCAAAAAAGGCCTTACTCCCCGCTTAAGGGGTATGATTTTGGGAATACCAAATGTAGGCAAATCTACTT
TTATTAATACGCTGATAGGGAGAAAAAAAGCAAAAACTGGCGATAAACCTGGAGTTACTAAAAGCCTTCACTGGATAAGG
ACGCCCTACCTTGACCTTTTAGATACTCCAGGGGTGCTGTGGCCAAAATTTGAAGATAAAACTACCGGATTCATGCTTGC
AATAACAGGGGCCATAAAGGATGAGATACTAGAGATGGAAGAAGTAGCTCTTTTTCTTGTTTCTATTTTAAAAAATCGCT
ATCCTGACTATTTGATAAATCGCTATAAACTTGATAAAATATGGGAAGAAGAAATAAAAATCATAGAAGATATAGGTAAA
AAAAGGGGTTGCTTAGTATCAGGAGGAGAAGTAGACTTTGTAAAAGCTTCAACTGTATTGCTAGAAGATTTTAGAAAGGG
GAACTTGGGGAGAATTTCGCTTGAAGAACCTTAA

Upstream 100 bases:

>100_bases
CTGAGGAAGAGAGTAGGAAAAGCTGCAACAAAGATAAAAGAATTGATGGAGTAAAAAGGGGGTTTTACCCCTTTTTTGAC
TATAGCGGAGGAATTAAGAG

Downstream 100 bases:

>100_bases
GGGGGAAATATTGTCATGCTCTCTAAAGTAAAAACCATGGCCATTTTAGGAATAGACGCATATGTAGTAGATGTAGAAAT
AGATTTAGGGACAGGGATAC

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MIQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKEDLADERITDLWIKHFKEKGIE
AVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPRLRGMILGIPNVGKSTFINTLIGRKKAKTGDKPGVTKSLHWIR
TPYLDLLDTPGVLWPKFEDKTTGFMLAITGAIKDEILEMEEVALFLVSILKNRYPDYLINRYKLDKIWEEEIKIIEDIGK
KRGCLVSGGEVDFVKASTVLLEDFRKGNLGRISLEEP

Sequences:

>Translated_277_residues
MIQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKEDLADERITDLWIKHFKEKGIE
AVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPRLRGMILGIPNVGKSTFINTLIGRKKAKTGDKPGVTKSLHWIR
TPYLDLLDTPGVLWPKFEDKTTGFMLAITGAIKDEILEMEEVALFLVSILKNRYPDYLINRYKLDKIWEEEIKIIEDIGK
KRGCLVSGGEVDFVKASTVLLEDFRKGNLGRISLEEP
>Mature_277_residues
MIQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKEDLADERITDLWIKHFKEKGIE
AVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPRLRGMILGIPNVGKSTFINTLIGRKKAKTGDKPGVTKSLHWIR
TPYLDLLDTPGVLWPKFEDKTTGFMLAITGAIKDEILEMEEVALFLVSILKNRYPDYLINRYKLDKIWEEEIKIIEDIGK
KRGCLVSGGEVDFVKASTVLLEDFRKGNLGRISLEEP

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=294, Percent_Identity=31.9727891156463, Blast_Score=144, Evalue=8e-35,
Organism=Homo sapiens, GI7019419, Length=255, Percent_Identity=29.0196078431373, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI296317324, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=1e-10,
Organism=Homo sapiens, GI9506611, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI193211047, Length=232, Percent_Identity=30.1724137931034, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32563985, Length=246, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71990926, Length=246, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32563983, Length=246, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17534827, Length=273, Percent_Identity=25.2747252747253, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=252, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6320842, Length=273, Percent_Identity=25.6410256410256, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6321339, Length=308, Percent_Identity=25.3246753246753, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=242, Percent_Identity=28.099173553719, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85815858, Length=307, Percent_Identity=28.9902280130293, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI19922460, Length=252, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28572990, Length=282, Percent_Identity=26.5957446808511, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31668; Mature: 31668

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKED
CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEECCHH
LADERITDLWIKHFKEKGIEAVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPRLR
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
GMILGIPNVGKSTFINTLIGRKKAKTGDKPGVTKSLHWIRTPYLDLLDTPGVLWPKFEDK
EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCC
TTGFMLAITGAIKDEILEMEEVALFLVSILKNRYPDYLINRYKLDKIWEEEIKIIEDIGK
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KRGCLVSGGEVDFVKASTVLLEDFRKGNLGRISLEEP
HCCCEEECCCEEEHHHHHHHHHHHCCCCCCEEECCCC
>Mature Secondary Structure
MIQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKED
CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEECCHH
LADERITDLWIKHFKEKGIEAVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLTPRLR
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
GMILGIPNVGKSTFINTLIGRKKAKTGDKPGVTKSLHWIRTPYLDLLDTPGVLWPKFEDK
EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCC
TTGFMLAITGAIKDEILEMEEVALFLVSILKNRYPDYLINRYKLDKIWEEEIKIIEDIGK
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KRGCLVSGGEVDFVKASTVLLEDFRKGNLGRISLEEP
HCCCEEECCCEEEHHHHHHHHHHHCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]