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The map label for this gene is Cda1.2 [H]

Identifier: 20807833

GI number: 20807833

Start: 1368931

End: 1369650

Strand: Reverse

Name: Cda1.2 [H]

Synonym: TTE1386

Alternate gene names: 20807833

Gene position: 1369650-1368931 (Counterclockwise)

Preceding gene: 20807834

Following gene: 20807832

Centisome position: 50.93

GC content: 35.69

Gene sequence:

>720_bases
ATGAAAATCTTTTATATAAAATACCCTAGCAAGAAAACTGTATGGCTTCTTGCAATTGCGGCTTTGCTCGCATTGATACT
TTTAATTTTCGCTCTCATGAAAACTGTCTCTGTATTTAACACCAATGAGCCCATATACAGAGGCGATACAAAAGAAAAGA
AAATAGCTTTTGCCTGCAATGTAGCGTGGGGAGATGAGTACATACCCAAAATGCTGGATATTTTTGAAAAAAACGATGTA
CATATAACATTTTTTTTTGAAGGAAAATGGGCAGAGAAAAATCCTGATGTAGTAAAGGAAATTTATAAAAAAGGGCATGA
AATAGGAAGCCACGGTTATTCTCACATCAAGTATACTAGTTTGTCAAAAGAGGATTGTGAAAAGGATATAAAAAAGAGCG
AAGAAGCTTTGGAGAAAATAACTGGGGAAAAGCCTACTCTCTTTGCACCCCCTTATGGCGACTTCAACGAACAAGTAGTG
AAAATTGCGGAAGAACTGGGATACAAAGTGATTTTATGGAGTTTAGATACCATAGACTGGAGCAATCCATCTCCACAAAC
CATTGTAGAAAGGGTAATGAATAAGTGCCACAATGGAGCTATTGTGCTCATGCATCCTACAAAAAACACTGTGGAAGCAC
TTCCTGAAATAATAAAACAGTTGAAAGAAAAGGGTTTTAAAATAACTAAAGTTTCAGAGGTGATTGTAGACAAAAAATAA

Upstream 100 bases:

>100_bases
ATAAACCGCCCCCACGGTTTATGTTTTTTATTTTTTAGTAATATAAACGCCGCCTGGCTGAATAAAATTAGAATGAGAAT
ACCAGACAGGTGGTGTTATA

Downstream 100 bases:

>100_bases
ATTTGCTATAATAATAGTAAATTTTTTAAGACAGAGGGGATGAAGTTGTATCAACAGAAGATGATAGCTGGAGTGAAAGT
TGCAAGTTGCAAAATACCTT

Product: xylanase/chitin deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKIFYIKYPSKKTVWLLAIAALLALILLIFALMKTVSVFNTNEPIYRGDTKEKKIAFACNVAWGDEYIPKMLDIFEKNDV
HITFFFEGKWAEKNPDVVKEIYKKGHEIGSHGYSHIKYTSLSKEDCEKDIKKSEEALEKITGEKPTLFAPPYGDFNEQVV
KIAEELGYKVILWSLDTIDWSNPSPQTIVERVMNKCHNGAIVLMHPTKNTVEALPEIIKQLKEKGFKITKVSEVIVDKK

Sequences:

>Translated_239_residues
MKIFYIKYPSKKTVWLLAIAALLALILLIFALMKTVSVFNTNEPIYRGDTKEKKIAFACNVAWGDEYIPKMLDIFEKNDV
HITFFFEGKWAEKNPDVVKEIYKKGHEIGSHGYSHIKYTSLSKEDCEKDIKKSEEALEKITGEKPTLFAPPYGDFNEQVV
KIAEELGYKVILWSLDTIDWSNPSPQTIVERVMNKCHNGAIVLMHPTKNTVEALPEIIKQLKEKGFKITKVSEVIVDKK
>Mature_239_residues
MKIFYIKYPSKKTVWLLAIAALLALILLIFALMKTVSVFNTNEPIYRGDTKEKKIAFACNVAWGDEYIPKMLDIFEKNDV
HITFFFEGKWAEKNPDVVKEIYKKGHEIGSHGYSHIKYTSLSKEDCEKDIKKSEEALEKITGEKPTLFAPPYGDFNEQVV
KIAEELGYKVILWSLDTIDWSNPSPQTIVERVMNKCHNGAIVLMHPTKNTVEALPEIIKQLKEKGFKITKVSEVIVDKK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=151, Percent_Identity=34.4370860927152, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6323338, Length=132, Percent_Identity=32.5757575757576, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014228
- InterPro:   IPR010916 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 27400; Mature: 27400

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFYIKYPSKKTVWLLAIAALLALILLIFALMKTVSVFNTNEPIYRGDTKEKKIAFACN
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
VAWGDEYIPKMLDIFEKNDVHITFFFEGKWAEKNPDVVKEIYKKGHEIGSHGYSHIKYTS
ECCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHCCCCCCEEEEEC
LSKEDCEKDIKKSEEALEKITGEKPTLFAPPYGDFNEQVVKIAEELGYKVILWSLDTIDW
CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
SNPSPQTIVERVMNKCHNGAIVLMHPTKNTVEALPEIIKQLKEKGFKITKVSEVIVDKK
CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCC
>Mature Secondary Structure
MKIFYIKYPSKKTVWLLAIAALLALILLIFALMKTVSVFNTNEPIYRGDTKEKKIAFACN
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
VAWGDEYIPKMLDIFEKNDVHITFFFEGKWAEKNPDVVKEIYKKGHEIGSHGYSHIKYTS
ECCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHCCCCCCEEEEEC
LSKEDCEKDIKKSEEALEKITGEKPTLFAPPYGDFNEQVVKIAEELGYKVILWSLDTIDW
CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
SNPSPQTIVERVMNKCHNGAIVLMHPTKNTVEALPEIIKQLKEKGFKITKVSEVIVDKK
CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 8825779 [H]