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The map label for this gene is scpB

Identifier: 20807774

GI number: 20807774

Start: 1312578

End: 1313084

Strand: Direct

Name: scpB

Synonym: TTE1325

Alternate gene names: 20807774

Gene position: 1312578-1313084 (Clockwise)

Preceding gene: 20807773

Following gene: 20807775

Centisome position: 48.8

GC content: 36.29

Gene sequence:

>507_bases
ATGACCCAGGAAGGCAAGATTGAAGCTATCCTCTTTGCAGCAGGACAAGCAGTAAAAATAAGGACTCTTGCAGAAGCATT
AGAAGTTACTGAAGAAGAAGTAAGGGAGTTGCTTAAAAGGTTAAAGGAAGAATATGTAAAGAATCATAGAGGAATAGACA
TAGTGATTTTTGAAGATAAAGTTGAGATGTGCACTAACGATTCGTACGGAGACATTGTAAGAAAGGCTTTGAAGATGGAA
ATAACCCAAGGGTTATCTCAGGCAGCTCTAGAGGTTTTAGCGATAATTGCCTATAACCAGCCTATTACAAAAGCAGAAAT
TGAAAGAATAAGAGGAGTAAGAAGTGATAAACCTATCAATACCTTATTGGAATACAATTTGATAAAAGAAAGCGGAAGAG
CTTCATCTCCAGGTAGACCTATTCTCTATTCAACTACAGAGGATTTTTTGAAATACTTTGGCATATCTTCTTTAAAAGAA
TTGCCCGAAATTGAACCTACTTCTTAG

Upstream 100 bases:

>100_bases
GCCCTTTTAGAGCTCATAAAACTAAACAGAGTAGCGGCAGAGCAGCAAACAGCTTATGGGGATATATTTATTAGATTTTT
AGGAAGAGAAGGGAGAAAAC

Downstream 100 bases:

>100_bases
TTTTACGGGCATTTTATAGAGGTGGAATGATGAAATATATATCTTTTGGCCTTCTAGTTTTTATTTTTTTAGTTGCCTTA
TATTTTTTGCCTCTCAAAGT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTQEGKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTNDSYGDIVRKALKME
ITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKE
LPEIEPTS

Sequences:

>Translated_168_residues
MTQEGKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTNDSYGDIVRKALKME
ITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKE
LPEIEPTS
>Mature_167_residues
TQEGKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTNDSYGDIVRKALKMEI
TQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKEL
PEIEPTS

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_THETN (Q8RAA0)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622945.1
- ProteinModelPortal:   Q8RAA0
- SMR:   Q8RAA0
- GeneID:   997714
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1325
- NMPDR:   fig|273068.3.peg.1265
- HOGENOM:   HBG752450
- OMA:   NILEEMQ
- ProtClustDB:   CLSK901174
- BioCyc:   TTEN273068:TTE1325-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 18945; Mature: 18814

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEGKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDK
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
VEMCTNDSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPIN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHH
TLLEYNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEIEPTS
HHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQEGKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDK
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
VEMCTNDSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPIN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHH
TLLEYNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEIEPTS
HHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336