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The map label for this gene is nusB

Identifier: 20807741

GI number: 20807741

Start: 1283509

End: 1283931

Strand: Direct

Name: nusB

Synonym: TTE1292

Alternate gene names: 20807741

Gene position: 1283509-1283931 (Clockwise)

Preceding gene: 20807740

Following gene: 20807742

Centisome position: 47.72

GC content: 39.72

Gene sequence:

>423_bases
ATGAACAGAACAGAAGCTAGAGAATGGGTTGTAAAAATGCTGTACCAGTACGACGTCTCAAAACTTCCTCTTGAAAAAAT
ATTTGAAAATTTTTACGAAGAACATGACCCTGGTGAACAAAAGGAGTACATAGAGGGCACTGTCAGAGGAACTGTTGAGC
ATCTGGAGGAAATTGACCGAGAGATAGAAAAATACTCTAAGGATTGGCCGCTTTATCGAATGCCAAGGATAGATTTGGCA
ATTTTAAGATGCAGTATGTACGAGATGCTTTACGGCAACATTCCTGTCAGCATATCCATAAATGAAGCGGTAGAAATAGC
AAAAAAATATAGCACTGACGATTCTCCCTCTTTCATAAACGGGCTTTTGGGAGCATTCGTCAGGGAAAAAGGATTAGAGG
AAGGTGAAGCGAATGATAATTGA

Upstream 100 bases:

>100_bases
AAATTTTCTAAACTAACCCTCTGCTAGTCAGAGGGTTAGTTTAGGTGAAGTTATGGTACAATAAAAAAGAAGAAGCTAGA
TTTTGCAAGGAGTTGAGAAA

Downstream 100 bases:

>100_bases
TGGAAAAGAAATTTCTAATAGAATAAAAGAAGAAGTTAAAAGGGAAATACAGGAATTTGGTTACAAACCTAGATTGGCAA
TATTGATGGCAGGAGATGAC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQKEYIEGTVRGTVEHLEEIDREIEKYSKDWPLYRMPRIDLA
ILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPSFINGLLGAFVREKGLEEGEANDN

Sequences:

>Translated_140_residues
MNRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQKEYIEGTVRGTVEHLEEIDREIEKYSKDWPLYRMPRIDLA
ILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPSFINGLLGAFVREKGLEEGEANDN
>Mature_140_residues
MNRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQKEYIEGTVRGTVEHLEEIDREIEKYSKDWPLYRMPRIDLA
ILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPSFINGLLGAFVREKGLEEGEANDN

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_THETN (Q8RAD1)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622912.1
- ProteinModelPortal:   Q8RAD1
- SMR:   Q8RAD1
- GeneID:   997641
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1292
- NMPDR:   fig|273068.3.peg.1183
- HOGENOM:   HBG734409
- OMA:   YGTENSG
- ProtClustDB:   PRK00202
- BioCyc:   TTEN273068:TTE1292-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16421; Mature: 16421

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQKEYIEGTVRGTVEHLEEIDR
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
EIEKYSKDWPLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPSFIN
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCHHHHH
GLLGAFVREKGLEEGEANDN
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHDPGEQKEYIEGTVRGTVEHLEEIDR
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
EIEKYSKDWPLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPSFIN
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCHHHHH
GLLGAFVREKGLEEGEANDN
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336