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The map label for this gene is LytT2 [H]

Identifier: 20807351

GI number: 20807351

Start: 878631

End: 879368

Strand: Reverse

Name: LytT2 [H]

Synonym: TTE0870

Alternate gene names: 20807351

Gene position: 879368-878631 (Counterclockwise)

Preceding gene: 20807352

Following gene: 20807350

Centisome position: 32.7

GC content: 36.18

Gene sequence:

>738_bases
ATGAAGAAGCTGAGAGCGTTAATTATTGAGGACGAACAACCTGCCAGAGAAGAACTAAAATATCTATTGCAGGAATATGA
AGATATAGAGGTAGTTGGAGAAGCAGACAATGGAATAACTGGATTACATCTGATTGAAAAACTAAAACCAGACGTCATAT
TCTTAGACATAAACATCCCTAAAATACACGGCTGTGAACTGGCAAGGCACATTTCAGCGGTTTCCGAAATAGGAAAACCT
CCCTTTGTAGTCTTTGTAACCGCCTATGATATTCACGCCATAGATGCCTTTGAAATAGGTGTGGTGGATTATCTGCTAAA
GCCCATAAGCCATCATCGCCTGTATAAAACCTTAGAAAAAATAAGGTCTTTATACAAAGAAACTGAAATTCCAATTAGAA
AACTTGCTGTGGAAAAGAACGAGAGAATAAAGCTTTTAGACTTAGAAGAAATAGTGTTCGCAGAAGCCCATGAAGGAAAT
GTGCTAATAAACACCAAAAATGAAACCTTCATCTACAAAGGCACAATAAAAAGCCTTGAAGAGAAACTAAAAGATAGAGG
ATTTTTTAGAGTACAAAAAAGCTATATAGTAAATCTAAACAAAATCGCAGAAATACTGCCCTGGTTTAAAGGAACATACT
GGCTTGTGATGGAAGATAATAAAAAGACACAAATACCCGTGAGCAAATCTCAAATAAAAGAATTAAAAGCCTTACTTGGC
CTTGACAGGGAGACTTAA

Upstream 100 bases:

>100_bases
TTTTGCAAGGAATGTGCCTTGTCAATTGAAAGTAAATTAGGTGAAGGCACAAAAGTATCCTTCAAAATTCCTAAAATTTA
CCTGCAGAGGAATGATATTT

Downstream 100 bases:

>100_bases
TCCCTGTCATTTCTTTTTATCTTTTCATATTTCCTTTCATCTTAGAAATTTACCATCTCATCTTAAAATTGCTGAAAGCG
TTTAATTAGTATGATAAATT

Product: response regulators of cell autolysis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKKLRALIIEDEQPAREELKYLLQEYEDIEVVGEADNGITGLHLIEKLKPDVIFLDINIPKIHGCELARHISAVSEIGKP
PFVVFVTAYDIHAIDAFEIGVVDYLLKPISHHRLYKTLEKIRSLYKETEIPIRKLAVEKNERIKLLDLEEIVFAEAHEGN
VLINTKNETFIYKGTIKSLEEKLKDRGFFRVQKSYIVNLNKIAEILPWFKGTYWLVMEDNKKTQIPVSKSQIKELKALLG
LDRET

Sequences:

>Translated_245_residues
MKKLRALIIEDEQPAREELKYLLQEYEDIEVVGEADNGITGLHLIEKLKPDVIFLDINIPKIHGCELARHISAVSEIGKP
PFVVFVTAYDIHAIDAFEIGVVDYLLKPISHHRLYKTLEKIRSLYKETEIPIRKLAVEKNERIKLLDLEEIVFAEAHEGN
VLINTKNETFIYKGTIKSLEEKLKDRGFFRVQKSYIVNLNKIAEILPWFKGTYWLVMEDNKKTQIPVSKSQIKELKALLG
LDRET
>Mature_245_residues
MKKLRALIIEDEQPAREELKYLLQEYEDIEVVGEADNGITGLHLIEKLKPDVIFLDINIPKIHGCELARHISAVSEIGKP
PFVVFVTAYDIHAIDAFEIGVVDYLLKPISHHRLYKTLEKIRSLYKETEIPIRKLAVEKNERIKLLDLEEIVFAEAHEGN
VLINTKNETFIYKGTIKSLEEKLKDRGFFRVQKSYIVNLNKIAEILPWFKGTYWLVMEDNKKTQIPVSKSQIKELKALLG
LDRET

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=248, Percent_Identity=37.0967741935484, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI87082052, Length=248, Percent_Identity=35.0806451612903, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28366; Mature: 28366

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLRALIIEDEQPAREELKYLLQEYEDIEVVGEADNGITGLHLIEKLKPDVIFLDINIP
CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCC
KIHGCELARHISAVSEIGKPPFVVFVTAYDIHAIDAFEIGVVDYLLKPISHHRLYKTLEK
CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
IRSLYKETEIPIRKLAVEKNERIKLLDLEEIVFAEAHEGNVLINTKNETFIYKGTIKSLE
HHHHHHHCCCCHHHHHCCCCCCEEEEEHHHHHHEECCCCCEEEEECCCEEEEECHHHHHH
EKLKDRGFFRVQKSYIVNLNKIAEILPWFKGTYWLVMEDNKKTQIPVSKSQIKELKALLG
HHHHHCCEEEEEHHHHCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
LDRET
CCCCC
>Mature Secondary Structure
MKKLRALIIEDEQPAREELKYLLQEYEDIEVVGEADNGITGLHLIEKLKPDVIFLDINIP
CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCC
KIHGCELARHISAVSEIGKPPFVVFVTAYDIHAIDAFEIGVVDYLLKPISHHRLYKTLEK
CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
IRSLYKETEIPIRKLAVEKNERIKLLDLEEIVFAEAHEGNVLINTKNETFIYKGTIKSLE
HHHHHHHCCCCHHHHHCCCCCCEEEEEHHHHHHEECCCCCEEEEECCCEEEEECHHHHHH
EKLKDRGFFRVQKSYIVNLNKIAEILPWFKGTYWLVMEDNKKTQIPVSKSQIKELKALLG
HHHHHCCEEEEEHHHHCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
LDRET
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]