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The map label for this gene is RbsB5 [H]

Identifier: 20807249

GI number: 20807249

Start: 765347

End: 766366

Strand: Direct

Name: RbsB5 [H]

Synonym: TTE0765

Alternate gene names: 20807249

Gene position: 765347-766366 (Clockwise)

Preceding gene: 20807248

Following gene: 20807250

Centisome position: 28.46

GC content: 36.67

Gene sequence:

>1020_bases
ATGAAAAGAAGTTCAATTTTCTTGACAATTTTGGTATTGGTGTTGGCTATTTCCTTAGTTTTTTCAGGCTGTAGTTCCAA
ACAACAGACTCCTTCATCATCTTCGACTCAAGAATCTTCCCAAACTGCTTCTTCAGAGAAAAAGTACAATATAGTATTGA
TTACGATGGATTCAATGGATGAACACTGGCTTGCAGTTAAAGCAGGAGCAGAGGCTAAAGCAAAAGAATTAGGAAATGTT
CAATTAACTTTTAGAGCTCCAGCAGAAAAAGCTGATCCAAACGAACAGGTAAGAATGATGGAAGATGCTATAAATCAAAA
GGCAGATGCTATCTTAATTGCCCCAACGGATCAAACAGCTTTAACTCCAGTAGTAGAAAAAGCTTTTGATGCTGGTATTC
CAGTGATACTTATAGATTCACCAGTTAAAACTGACAAGTATGTTAGCTTTGTTGCAACAGATAACATAAAAGCTGCTGAA
ATGGCTGCTGACAAGCTAGGTGAGTTGTTAGGCGGTAAAGGGAAAATTGCTATAATAAGTGCACAACCTGGTTCAGGAAC
CACAATTATGAGGGAAAATGGATTTAAAGACAGATTAAAAGAGAAATATCCTGATATACAGATAATTACCACACAGTATT
CTATGGGAGACAAAAATAGAGCATTAAACCAGGCTTTAGATATACTAACTGCTCATCCAGACCTTGCTGGATTTTATGGC
ACTAATGAGGGGTCTACTATTGGTATAGCTATGGCTATAAAACAAAAAGACTTGGCAGGAAAAGTAAAAGTCGTTGGATT
TGATATTTCACAAGCTACAATTAACGCAATTAAAGAAAATTATATCCAGGCCTCCATGGTTCAGAATCCGTATATGATGG
GATATAAAGGAGTAGAGATAGCTGTAGATAAATTGCAGGGTAAGGAAGTACCAAAAAGAGTTGACACAGGTGTTACAGTT
ATGACAAAGGACAATGTAGATGAAGTAGTTAAAGAGTACTATAAAGGGCAATCCAAGTAG

Upstream 100 bases:

>100_bases
AGAACAAACACGTTTTTGAGGGGGGTGATGGGGTAGAAAATTAAAAAAGTCCCGTATTTCAAAATCATCAAATAAAATTA
AAATAAGGGGGAAGGAAGGT

Downstream 100 bases:

>100_bases
AGAGACTATGTAAAAGAACGAGGTAAAAATCGCTTTATGCGATTTTTACCTCTTAAATTTAACAATGAAAGGGTGTGGAG
ATGGAAATATTAATTCCTGT

Product: periplasmic sugar-binding proteins

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNV
QLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAE
MAADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFYG
TNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTV
MTKDNVDEVVKEYYKGQSK

Sequences:

>Translated_339_residues
MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNV
QLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAE
MAADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFYG
TNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTV
MTKDNVDEVVKEYYKGQSK
>Mature_339_residues
MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNV
QLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAE
MAADKLGELLGGKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFYG
TNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVDTGVTV
MTKDNVDEVVKEYYKGQSK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=284, Percent_Identity=29.5774647887324, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790192, Length=286, Percent_Identity=27.972027972028, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788898, Length=253, Percent_Identity=26.4822134387352, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790674, Length=215, Percent_Identity=28.8372093023256, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787795, Length=176, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36710; Mature: 36710

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCC
EHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTA
CCEEEEECCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH
LTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMAADKLGELLGGKGKIAIIS
HHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
AQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFYG
ECCCCCCEEEECCCCHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEECC
TNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGVEI
CCCCCEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEE
AVDKLQGKEVPKRVDTGVTVMTKDNVDEVVKEYYKGQSK
EEEHHCCCCCCHHHCCCEEEEECCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCC
EHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTA
CCEEEEECCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH
LTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMAADKLGELLGGKGKIAIIS
HHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
AQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFYG
ECCCCCCEEEECCCCHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEECC
TNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGVEI
CCCCCEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEE
AVDKLQGKEVPKRVDTGVTVMTKDNVDEVVKEYYKGQSK
EEEHHCCCCCCHHHCCCEEEEECCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]