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The map label for this gene is AraH3 [H]

Identifier: 20807248

GI number: 20807248

Start: 764274

End: 765248

Strand: Direct

Name: AraH3 [H]

Synonym: TTE0764

Alternate gene names: 20807248

Gene position: 764274-765248 (Clockwise)

Preceding gene: 20807247

Following gene: 20807249

Centisome position: 28.42

GC content: 36.0

Gene sequence:

>975_bases
ATGCAAAATTTGGATAAAAAAGTAGTAACTTCGGAACCAAATAACAAAAGAAAATTTTCTACTAGATTACAATTATTTTC
TACGTGGGGAGCGCTTGCTATTTTGGTAGTATTTTTCAGTATTACTTCTGACAAGTTTTTAACAGTAGATAATTTGTTAA
CAGTAGCTTTGCAAACCTCTATAATAGCAATAATAGCAATGGGCCAAACTTATGTAATTATTACTGGTGGTATAGATCTT
TCTATTGGTTCCAATATAGCGTTAGGTGGTGTGGTAGCAGCGCTTTTAATGGCTAATGGATTTTCTATTCCTGTTTCTAT
AGTGATAGCATTATTGGTAGGACTATTTGTAGGAACGTTAAATGGTACATTGATTGCATACGGTAAGATTCCTCCTTTCA
TAGTAACTTTGGGAGCAATGAGTATAATTAGAGGGACGGCATATGTGTTAACAGGTGGTATTCCAATAACAAACGTGCCA
CTAGAATTTTCTGCTTTTGGGATGGGGAGAATACTCAGAATACCAGTGCCTGTTATAATAATGGTCATCTTGATTGCAAT
TTTTGGTTTTATCCTCGCAAAAACTAAATTAGGTAGATACATTTATGCAGTGGGAAGCAATAGAGAAGCAGCTCGATTAG
CAGGAATAAATATTCCTACAGTTTTAATTGCAGTATATGCAATAAGTGGATTTTTAGCAGTATGGGCTGGAATAATTGTA
GCTGGTAGGATAATTTCAGGTCAACCGGCAGCTGGAATGGGCTATGAATTAGATGCTGTAGCTGCTTCAGTTATAGGTGG
GGCAAGTCTTTTTGGTGGTGAAGGAACTATTTTAGGAACAATTGCAGGTGCTTTTGTAATGGGTGTGTTAAGAAATGGTT
TAAACTTGTTAAATGTGTCTGCTTTTTGGCAGCAAATCATAATTGGAGCTGTAATTATCGGAGCAGTGTTCTTAGATACT
ATAAGAAGGCGTTAG

Upstream 100 bases:

>100_bases
TGCGAGGGAAGAATAACTGCAATTCTTGAAACTAGTAAAACTACACAAGAGGAAATAATGTATTATGCGACACTATATAA
AAAAGAAAGGAGTAATTAAG

Downstream 100 bases:

>100_bases
AACAAACACGTTTTTGAGGGGGGTGATGGGGTAGAAAATTAAAAAAGTCCCGTATTTCAAAATCATCAAATAAAATTAAA
ATAAGGGGGAAGGAAGGTAT

Product: ribose/xylose/arabinose/galactoside ABC-type transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MQNLDKKVVTSEPNNKRKFSTRLQLFSTWGALAILVVFFSITSDKFLTVDNLLTVALQTSIIAIIAMGQTYVIITGGIDL
SIGSNIALGGVVAALLMANGFSIPVSIVIALLVGLFVGTLNGTLIAYGKIPPFIVTLGAMSIIRGTAYVLTGGIPITNVP
LEFSAFGMGRILRIPVPVIIMVILIAIFGFILAKTKLGRYIYAVGSNREAARLAGINIPTVLIAVYAISGFLAVWAGIIV
AGRIISGQPAAGMGYELDAVAASVIGGASLFGGEGTILGTIAGAFVMGVLRNGLNLLNVSAFWQQIIIGAVIIGAVFLDT
IRRR

Sequences:

>Translated_324_residues
MQNLDKKVVTSEPNNKRKFSTRLQLFSTWGALAILVVFFSITSDKFLTVDNLLTVALQTSIIAIIAMGQTYVIITGGIDL
SIGSNIALGGVVAALLMANGFSIPVSIVIALLVGLFVGTLNGTLIAYGKIPPFIVTLGAMSIIRGTAYVLTGGIPITNVP
LEFSAFGMGRILRIPVPVIIMVILIAIFGFILAKTKLGRYIYAVGSNREAARLAGINIPTVLIAVYAISGFLAVWAGIIV
AGRIISGQPAAGMGYELDAVAASVIGGASLFGGEGTILGTIAGAFVMGVLRNGLNLLNVSAFWQQIIIGAVIIGAVFLDT
IRRR
>Mature_324_residues
MQNLDKKVVTSEPNNKRKFSTRLQLFSTWGALAILVVFFSITSDKFLTVDNLLTVALQTSIIAIIAMGQTYVIITGGIDL
SIGSNIALGGVVAALLMANGFSIPVSIVIALLVGLFVGTLNGTLIAYGKIPPFIVTLGAMSIIRGTAYVLTGGIPITNVP
LEFSAFGMGRILRIPVPVIIMVILIAIFGFILAKTKLGRYIYAVGSNREAARLAGINIPTVLIAVYAISGFLAVWAGIIV
AGRIISGQPAAGMGYELDAVAASVIGGASLFGGEGTILGTIAGAFVMGVLRNGLNLLNVSAFWQQIIIGAVIIGAVFLDT
IRRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=43.613707165109, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=36.5625, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI145693152, Length=304, Percent_Identity=35.8552631578947, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1788896, Length=290, Percent_Identity=37.5862068965517, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=36.3914373088685, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787793, Length=277, Percent_Identity=35.3790613718412, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI145693214, Length=235, Percent_Identity=40.4255319148936, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87082395, Length=290, Percent_Identity=36.8965517241379, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=47.4074074074074, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787794, Length=288, Percent_Identity=31.9444444444444, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33853; Mature: 33853

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLDKKVVTSEPNNKRKFSTRLQLFSTWGALAILVVFFSITSDKFLTVDNLLTVALQTS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
IIAIIAMGQTYVIITGGIDLSIGSNIALGGVVAALLMANGFSIPVSIVIALLVGLFVGTL
HHHHEEECCEEEEEECCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NGTLIAYGKIPPFIVTLGAMSIIRGTAYVLTGGIPITNVPLEFSAFGMGRILRIPVPVII
CCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCEEECCCCEEECCCCCCEEECCHHHHH
MVILIAIFGFILAKTKLGRYIYAVGSNREAARLAGINIPTVLIAVYAISGFLAVWAGIIV
HHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHH
AGRIISGQPAAGMGYELDAVAASVIGGASLFGGEGTILGTIAGAFVMGVLRNGLNLLNVS
HHHEECCCCCCCCCCCHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHH
AFWQQIIIGAVIIGAVFLDTIRRR
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQNLDKKVVTSEPNNKRKFSTRLQLFSTWGALAILVVFFSITSDKFLTVDNLLTVALQTS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
IIAIIAMGQTYVIITGGIDLSIGSNIALGGVVAALLMANGFSIPVSIVIALLVGLFVGTL
HHHHEEECCEEEEEECCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NGTLIAYGKIPPFIVTLGAMSIIRGTAYVLTGGIPITNVPLEFSAFGMGRILRIPVPVII
CCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCEEECCCCEEECCCCCCEEECCHHHHH
MVILIAIFGFILAKTKLGRYIYAVGSNREAARLAGINIPTVLIAVYAISGFLAVWAGIIV
HHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHH
AGRIISGQPAAGMGYELDAVAASVIGGASLFGGEGTILGTIAGAFVMGVLRNGLNLLNVS
HHHEECCCCCCCCCCCHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHH
AFWQQIIIGAVIIGAVFLDTIRRR
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]