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The map label for this gene is yddE [C]

Identifier: 20807216

GI number: 20807216

Start: 732659

End: 733534

Strand: Reverse

Name: yddE [C]

Synonym: TTE0729

Alternate gene names: 20807216

Gene position: 733534-732659 (Counterclockwise)

Preceding gene: 20807223

Following gene: 20807215

Centisome position: 27.27

GC content: 37.67

Gene sequence:

>876_bases
ATGAAAATATTTATTGTGGATGCCTTTACTGAGAAACCTTTTTCAGGCAATCCAGCAGGTGTAGTTGTCCTTGAAAATGG
CGAAAAAATAGATGAAACTTTTATGCAAAACTTGGCAGCAGAGCTCAAACATTCAGAGACAGCATTTATAGAAGTAGTAG
GTGAAAAAGACTTCAAAGTGCGCTTTTTCACTCCAACTTCTGAGGTAGACCTGTGCGGTCATGCCACAATTGCTTCCTTC
ACTGTTTTAAAAAGACTGGGCTTTGTAAAAGCCGGTGATGTTGTAACAATGCATTCACTAGCTGGAAAACTTCCAATTTA
TATAGAAGAGGATAAAATAATGATGGAGCAGGCTGCTCCGCAGGCGGGAGAAAAATTAAATGAAGATGACCTTTCAAAAC
TTGCGAAAGCTCTAAACATCTCCGTTGAAGAAATTGGTGATAAAAATTATGACCTCGTACCTCAACTGGTATCCACAGGA
TTATGGGATATTCTTGTACCCGTCAAATCAAGAGAAACCCTTTTTAGCATAAACCCGGATTACCAGGCAATATCTCAGAT
TACAAAAGAAAAAAATGCTGTAAGTCTTCACGTATTCACATTGGAGGAAAAGAAAGCTATCGCTAATTGCAGAGATTTCG
CTCCATTATACGGGATAAATGAGGAAGCTGCAACAGGAACGGCAAATGGCGCTTTAACATATTATCTTTACTTAAATAAG
GTAATCGATTTAGAAAAAACATATCTAATTCATCAAGGAGAAAGTATGAAAAGACCTTCTAAAATATACGTGAAACTTCC
AAAAAAAGAAGAAGGAATAAGGGTTTTGGTAGGAGGTCCCGCACGTATTCTAATTAGTGGAAATTGGTCAGACTGA

Upstream 100 bases:

>100_bases
ATATCTTTAACAACACTGGGGGCAAAAATGTAGTTTTTGAAAAAACAGCTAATGTGTTATATTAAAAGTAAAAACAAATT
CAAAAGGGGGAGAAAAAGGG

Downstream 100 bases:

>100_bases
ATTATGAATCTTGTATAATTTTTTATAAAAAATTTGTAGGAGTTACACAAAATCATTCTTGCAAATGTCTTCAAAAAGTA
TTATAATTTAGGCATACTAG

Product: epimerase, PhzC/PhzF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKIFIVDAFTEKPFSGNPAGVVVLENGEKIDETFMQNLAAELKHSETAFIEVVGEKDFKVRFFTPTSEVDLCGHATIASF
TVLKRLGFVKAGDVVTMHSLAGKLPIYIEEDKIMMEQAAPQAGEKLNEDDLSKLAKALNISVEEIGDKNYDLVPQLVSTG
LWDILVPVKSRETLFSINPDYQAISQITKEKNAVSLHVFTLEEKKAIANCRDFAPLYGINEEAATGTANGALTYYLYLNK
VIDLEKTYLIHQGESMKRPSKIYVKLPKKEEGIRVLVGGPARILISGNWSD

Sequences:

>Translated_291_residues
MKIFIVDAFTEKPFSGNPAGVVVLENGEKIDETFMQNLAAELKHSETAFIEVVGEKDFKVRFFTPTSEVDLCGHATIASF
TVLKRLGFVKAGDVVTMHSLAGKLPIYIEEDKIMMEQAAPQAGEKLNEDDLSKLAKALNISVEEIGDKNYDLVPQLVSTG
LWDILVPVKSRETLFSINPDYQAISQITKEKNAVSLHVFTLEEKKAIANCRDFAPLYGINEEAATGTANGALTYYLYLNK
VIDLEKTYLIHQGESMKRPSKIYVKLPKKEEGIRVLVGGPARILISGNWSD
>Mature_291_residues
MKIFIVDAFTEKPFSGNPAGVVVLENGEKIDETFMQNLAAELKHSETAFIEVVGEKDFKVRFFTPTSEVDLCGHATIASF
TVLKRLGFVKAGDVVTMHSLAGKLPIYIEEDKIMMEQAAPQAGEKLNEDDLSKLAKALNISVEEIGDKNYDLVPQLVSTG
LWDILVPVKSRETLFSINPDYQAISQITKEKNAVSLHVFTLEEKKAIANCRDFAPLYGINEEAATGTANGALTYYLYLNK
VIDLEKTYLIHQGESMKRPSKIYVKLPKKEEGIRVLVGGPARILISGNWSD

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=252, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI1787737, Length=298, Percent_Identity=32.5503355704698, Blast_Score=143, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17542160, Length=322, Percent_Identity=26.7080745341615, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17542154, Length=322, Percent_Identity=26.7080745341615, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17542158, Length=264, Percent_Identity=31.0606060606061, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17542152, Length=264, Percent_Identity=31.0606060606061, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321818, Length=293, Percent_Identity=29.6928327645051, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32245; Mature: 32245

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFIVDAFTEKPFSGNPAGVVVLENGEKIDETFMQNLAAELKHSETAFIEVVGEKDFKV
CEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE
RFFTPTSEVDLCGHATIASFTVLKRLGFVKAGDVVTMHSLAGKLPIYIEEDKIMMEQAAP
EEECCCCCCCCCCCHHHHHHHHHHHHCCEECCCEEEEHHHCCCCCEEECCCCHHHHHCCC
QAGEKLNEDDLSKLAKALNISVEEIGDKNYDLVPQLVSTGLWDILVPVKSRETLFSINPD
HHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCEEEEEECCCCCEEEEECCC
YQAISQITKEKNAVSLHVFTLEEKKAIANCRDFAPLYGINEEAATGTANGALTYYLYLNK
HHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHCCHHCCCCCCCCCCCCCCEEEEEEEEEH
VIDLEKTYLIHQGESMKRPSKIYVKLPKKEEGIRVLVGGPARILISGNWSD
HHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCEEEECCCEEEEEECCCCC
>Mature Secondary Structure
MKIFIVDAFTEKPFSGNPAGVVVLENGEKIDETFMQNLAAELKHSETAFIEVVGEKDFKV
CEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE
RFFTPTSEVDLCGHATIASFTVLKRLGFVKAGDVVTMHSLAGKLPIYIEEDKIMMEQAAP
EEECCCCCCCCCCCHHHHHHHHHHHHCCEECCCEEEEHHHCCCCCEEECCCCHHHHHCCC
QAGEKLNEDDLSKLAKALNISVEEIGDKNYDLVPQLVSTGLWDILVPVKSRETLFSINPD
HHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCEEEEEECCCCCEEEEECCC
YQAISQITKEKNAVSLHVFTLEEKKAIANCRDFAPLYGINEEAATGTANGALTYYLYLNK
HHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHCCHHCCCCCCCCCCCCCCEEEEEEEEEH
VIDLEKTYLIHQGESMKRPSKIYVKLPKKEEGIRVLVGGPARILISGNWSD
HHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCEEEECCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]