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The map label for this gene is LytR2 [H]

Identifier: 20807223

GI number: 20807223

Start: 738757

End: 739419

Strand: Reverse

Name: LytR2 [H]

Synonym: TTE0736

Alternate gene names: 20807223

Gene position: 739419-738757 (Counterclockwise)

Preceding gene: 20807225

Following gene: 20807216

Centisome position: 27.49

GC content: 32.43

Gene sequence:

>663_bases
ATGATATTTTGTGTTGACTTGGATGATAAAATAATAAAAGTACTTTCCATACCGAGAGATACTTACGTGGATATTCCTGG
TTTTGGAAAAGACAAAATTAATGCTGCATATGTATATGGTGGAATGGGAGAAAAAGGATACGCCCTCAGTTTGAAAACTA
TAAGCGAATTTTTAGGAATTAATGTGCCTTATTACATTTCCATGGATATGCAAACAATACCTGAAATTGTAGACGCAATT
GGTGGGATACCTTTAGATGTAGAAATAAATATGCATACTCACGGAGCAAATCTAGATAAAGGATATCAAATTTTAGATGG
CCAAAAAGCTTATCAATATGTGCGATGGCGATATGACCCCATGGGGGATATAAACCGCGTTAAAAGACAACAAAAGTTCA
TAATCGCTTTTGCTAATCAATTAAAAAATAAAACTAGAAGTTTATCTGACTACTTAGACCTTTATAATGCTTTTAAGGGC
AAGCTTTATACCAATCTTAATTACGAACAGATACTAGCTTTAATTTATGTCGTAAAGGATATATCGCCAGATTCCATTGA
AAAATTCATGGTTCCAGGAGAATTTTACAATTTAAATGGCATTAGCTATTGGAAACCTGATATGCGAAAACTAGATGAAG
TACTTAAAAATTTTACAAACTAA

Upstream 100 bases:

>100_bases
ATGATGTTTAGTTGACACCTATATCATACACGATTTTCACTATGGTTTCTATTCTTTTATCTGTTGCATTTAATTATACA
ACTAACCAACAGATACTATA

Downstream 100 bases:

>100_bases
AAAGACGCTGTCAAAAGCGTCTTTTTAGTCTGTAAAACCATTTCACTTTTTTCTTTATGGGATCCAATATTTCAATCTCT
TCCCCCCGAACAACTTTTTG

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MIFCVDLDDKIIKVLSIPRDTYVDIPGFGKDKINAAYVYGGMGEKGYALSLKTISEFLGINVPYYISMDMQTIPEIVDAI
GGIPLDVEINMHTHGANLDKGYQILDGQKAYQYVRWRYDPMGDINRVKRQQKFIIAFANQLKNKTRSLSDYLDLYNAFKG
KLYTNLNYEQILALIYVVKDISPDSIEKFMVPGEFYNLNGISYWKPDMRKLDEVLKNFTN

Sequences:

>Translated_220_residues
MIFCVDLDDKIIKVLSIPRDTYVDIPGFGKDKINAAYVYGGMGEKGYALSLKTISEFLGINVPYYISMDMQTIPEIVDAI
GGIPLDVEINMHTHGANLDKGYQILDGQKAYQYVRWRYDPMGDINRVKRQQKFIIAFANQLKNKTRSLSDYLDLYNAFKG
KLYTNLNYEQILALIYVVKDISPDSIEKFMVPGEFYNLNGISYWKPDMRKLDEVLKNFTN
>Mature_220_residues
MIFCVDLDDKIIKVLSIPRDTYVDIPGFGKDKINAAYVYGGMGEKGYALSLKTISEFLGINVPYYISMDMQTIPEIVDAI
GGIPLDVEINMHTHGANLDKGYQILDGQKAYQYVRWRYDPMGDINRVKRQQKFIIAFANQLKNKTRSLSDYLDLYNAFKG
KLYTNLNYEQILALIYVVKDISPDSIEKFMVPGEFYNLNGISYWKPDMRKLDEVLKNFTN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 25318; Mature: 25318

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFCVDLDDKIIKVLSIPRDTYVDIPGFGKDKINAAYVYGGMGEKGYALSLKTISEFLGI
CEEEEECCHHHHHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHCC
NVPYYISMDMQTIPEIVDAIGGIPLDVEINMHTHGANLDKGYQILDGQKAYQYVRWRYDP
CCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEECCCHHHHHHHHEECCC
MGDINRVKRQQKFIIAFANQLKNKTRSLSDYLDLYNAFKGKLYTNLNYEQILALIYVVKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHC
ISPDSIEKFMVPGEFYNLNGISYWKPDMRKLDEVLKNFTN
CCHHHHHHHCCCCCEEECCCCEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFCVDLDDKIIKVLSIPRDTYVDIPGFGKDKINAAYVYGGMGEKGYALSLKTISEFLGI
CEEEEECCHHHHHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHCC
NVPYYISMDMQTIPEIVDAIGGIPLDVEINMHTHGANLDKGYQILDGQKAYQYVRWRYDP
CCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEECCCHHHHHHHHEECCC
MGDINRVKRQQKFIIAFANQLKNKTRSLSDYLDLYNAFKGKLYTNLNYEQILALIYVVKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHC
ISPDSIEKFMVPGEFYNLNGISYWKPDMRKLDEVLKNFTN
CCHHHHHHHCCCCCEEECCCCEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]