Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 20807202

GI number: 20807202

Start: 716265

End: 717461

Strand: Direct

Name: ydcM [C]

Synonym: TTE0715

Alternate gene names: 20807202

Gene position: 716265-717461 (Clockwise)

Preceding gene: 20807201

Following gene: 20807203

Centisome position: 26.63

GC content: 31.66

Gene sequence:

>1197_bases
TTGAAGATAATAGTCAAGAGAGTAGAACAGATACAGATAAATAAGAATCATGAATTATGGCCTTATTGTGATGAAATATG
CTTTGCAGCAAAAAACTTATACAATTACGCCAACTACATTACAAGGCAGGAATTTATAAACAACAAAAAATGGATAAGGT
ACAGGAAACTCAATAAGATGTTAAAAGAACACGAAACATACAAAAACTTACCAGCACAAACAGCACAACAAACCTTAAGA
CTTCTCGATAGAAACTGGAAGTCATTTTTTAGAGCAATGAAAGAATGGGACGAAGATAAAGAAAAGTTTAATGGCAGACC
TAATTTACCAAAATACAAAAAGAAAAATGGAAGAAGCGTTGCTATATTTACAAATCAACAGTGTAAAATTAAAGATGGGC
ATTTGAGTTTCCCAAAAACAAATTTAAAGCTAAAAACAAGAATAACAGGCAAATTAAAAGAAGTCAGGATAATCCCAAAA
GGAAGTGTTTATGTTATTGAAATAGTCTATGAAAAAGAAGTAGTTGAAACAAAGAAGCCCTCAAAAAGAATAGCGGGCAT
AGATTTAGGGCTTAATAACTTTGTAACTTTGGTAAATAACATAGGCATAAAGCCTATTGTTATTAATGGCAAAGTTATTA
AGTCAATAAATCAATATTACAACAAGAAAAAGGCAGAGTTAATGAGTTATGTAGGAGACAGAGGTACCAGCAATAGGATT
GAAAAACTAACTCTAAAAAGGAATAACAAAATAAAAGACCTTATGCATAAAATAAGTAGATTTATAGTCAACTGGTGCAA
ACAACATGACATAGACACAATTGTAATAGGATACAATTCTGGATGGAAGCAGGAAATAGAATTAGGAAAGGTAAATAATC
AAAATTTTGTTAACATTCCTTTTAGTGATTTCATAAACATGCTTGAGTATAAATGCAAGGAAGAAGGTATAAACTTTGTG
CTTGTAGAAGAAAGTTACACCAGTGGCTGTAGTTTTTTAGATGGGGAAGAAATTAACAAAACAAACTACAATCCACAAAG
GAGAATAAAAAGGGGTTTGTTTAGGAGTAATAAAGGAATTTTAATAAATGCTGATGTTAATAGTGCTTATAATATCGTAA
GAAAAGTATTCCCCGAAGCATTTGCAGAGGGGATAGAGGGTGTGGGGTTACACCCAGTTAGGCTGAATATAGCCTAA

Upstream 100 bases:

>100_bases
ATAATTGAAGAAATTATAAGTTTGCTGCACTGTTACAGTATGAAATTCTACAGCAAAGGAAAAATTCAAAAAATAAGAAA
GTTTTTAGAAAACGAGGTGT

Downstream 100 bases:

>100_bases
CAAAGAATAGTGTTTAATAAAATTTTGAATAGTTTTTAATACTTTAAACACTATTCATAACCTAAGCAAATGGCTTGAAG
ATAACTATAATTTCTAAAAT

Product: transposase

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Transposase ORF_B; Neutral Protease; ISSoc6 OrfB Transposase; Transposase Family; Transposase ISC; Transposase Family Protein; IS Element ISTsi2 OrfB Probably Transposase; Transposase OrfB; Transposase IS; Transposase Orf_b

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKIIVKRVEQIQINKNHELWPYCDEICFAAKNLYNYANYITRQEFINNKKWIRYRKLNKMLKEHETYKNLPAQTAQQTLR
LLDRNWKSFFRAMKEWDEDKEKFNGRPNLPKYKKKNGRSVAIFTNQQCKIKDGHLSFPKTNLKLKTRITGKLKEVRIIPK
GSVYVIEIVYEKEVVETKKPSKRIAGIDLGLNNFVTLVNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGDRGTSNRI
EKLTLKRNNKIKDLMHKISRFIVNWCKQHDIDTIVIGYNSGWKQEIELGKVNNQNFVNIPFSDFINMLEYKCKEEGINFV
LVEESYTSGCSFLDGEEINKTNYNPQRRIKRGLFRSNKGILINADVNSAYNIVRKVFPEAFAEGIEGVGLHPVRLNIA

Sequences:

>Translated_398_residues
MKIIVKRVEQIQINKNHELWPYCDEICFAAKNLYNYANYITRQEFINNKKWIRYRKLNKMLKEHETYKNLPAQTAQQTLR
LLDRNWKSFFRAMKEWDEDKEKFNGRPNLPKYKKKNGRSVAIFTNQQCKIKDGHLSFPKTNLKLKTRITGKLKEVRIIPK
GSVYVIEIVYEKEVVETKKPSKRIAGIDLGLNNFVTLVNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGDRGTSNRI
EKLTLKRNNKIKDLMHKISRFIVNWCKQHDIDTIVIGYNSGWKQEIELGKVNNQNFVNIPFSDFINMLEYKCKEEGINFV
LVEESYTSGCSFLDGEEINKTNYNPQRRIKRGLFRSNKGILINADVNSAYNIVRKVFPEAFAEGIEGVGLHPVRLNIA
>Mature_398_residues
MKIIVKRVEQIQINKNHELWPYCDEICFAAKNLYNYANYITRQEFINNKKWIRYRKLNKMLKEHETYKNLPAQTAQQTLR
LLDRNWKSFFRAMKEWDEDKEKFNGRPNLPKYKKKNGRSVAIFTNQQCKIKDGHLSFPKTNLKLKTRITGKLKEVRIIPK
GSVYVIEIVYEKEVVETKKPSKRIAGIDLGLNNFVTLVNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGDRGTSNRI
EKLTLKRNNKIKDLMHKISRFIVNWCKQHDIDTIVIGYNSGWKQEIELGKVNNQNFVNIPFSDFINMLEYKCKEEGINFV
LVEESYTSGCSFLDGEEINKTNYNPQRRIKRGLFRSNKGILINADVNSAYNIVRKVFPEAFAEGIEGVGLHPVRLNIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46553; Mature: 46553

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIVKRVEQIQINKNHELWPYCDEICFAAKNLYNYANYITRQEFINNKKWIRYRKLNKM
CCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LKEHETYKNLPAQTAQQTLRLLDRNWKSFFRAMKEWDEDKEKFNGRPNLPKYKKKNGRSV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHCCCCCEE
AIFTNQQCKIKDGHLSFPKTNLKLKTRITGKLKEVRIIPKGSVYVIEIVYEKEVVETKKP
EEEECCCEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEEEECHHHHHCCCC
SKRIAGIDLGLNNFVTLVNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGDRGTSNRI
CHHEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EKLTLKRNNKIKDLMHKISRFIVNWCKQHDIDTIVIGYNSGWKQEIELGKVNNQNFVNIP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEECC
FSDFINMLEYKCKEEGINFVLVEESYTSGCSFLDGEEINKTNYNPQRRIKRGLFRSNKGI
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
LINADVNSAYNIVRKVFPEAFAEGIEGVGLHPVRLNIA
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKIIVKRVEQIQINKNHELWPYCDEICFAAKNLYNYANYITRQEFINNKKWIRYRKLNKM
CCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LKEHETYKNLPAQTAQQTLRLLDRNWKSFFRAMKEWDEDKEKFNGRPNLPKYKKKNGRSV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHCCCCCEE
AIFTNQQCKIKDGHLSFPKTNLKLKTRITGKLKEVRIIPKGSVYVIEIVYEKEVVETKKP
EEEECCCEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEEEECHHHHHCCCC
SKRIAGIDLGLNNFVTLVNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGDRGTSNRI
CHHEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EKLTLKRNNKIKDLMHKISRFIVNWCKQHDIDTIVIGYNSGWKQEIELGKVNNQNFVNIP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEECC
FSDFINMLEYKCKEEGINFVLVEESYTSGCSFLDGEEINKTNYNPQRRIKRGLFRSNKGI
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
LINADVNSAYNIVRKVFPEAFAEGIEGVGLHPVRLNIA
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA