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The map label for this gene is RtcB [C]

Identifier: 20807196

GI number: 20807196

Start: 712367

End: 713809

Strand: Direct

Name: RtcB [C]

Synonym: TTE0709

Alternate gene names: 20807196

Gene position: 712367-713809 (Clockwise)

Preceding gene: 20807195

Following gene: 20807197

Centisome position: 26.49

GC content: 43.45

Gene sequence:

>1443_bases
ATGGCTGTGGATATTATTCAAGGCTATACCCTGGTGAAGGATGGGGTAAATAAATGGAGAATTCCCAAGTTTGGGAAGAT
GAGGGTTGACGCTGTCGTCTATGTAAATGATAGTTTAAAAGAGCTTTTGAGAGATGACCAATCCTTAAGGCAGCTTGTTA
ATGCTGCAAGCCTCCCTGGTGTAGTAGAACCGGTGATTGGCATGCCGGATATTCACGAAGGTTTTGGACTTCCGATAGGG
GGAGTCATGGCTATAGAAGAAAAAGGGGTGATTTCGGCCGGAGCAGTAGGGTATGATATAAATTGTGGTGTGAGACTTAT
AAGGTCTGACCTTGAGGCAGACTATTTTACAAAAGATATACTGTATAAGTTGATAGAGAGGATTGAACATTACGTTCCGA
CCGGGATAGGCAAAAAAGGAAGGCATAAGGGTATTACCCGGGTAATTTTTGACGATGTTGTGCACAATGGAGTTGAAGCG
GTGATTAAAGCAGGTTTTGGCAAAAAGTCTGATTTGGAGTATATTGAAGAGGGAGGGAAACTTGAAGGAGCCGATATTTC
GGCGGTATCAGAAGAAGCTCAGGAAAGAGGAGAAGAACAGCTGGGGACCCTGGGAGGAGGCAATCACTTTATAGAAATTC
AGAAAGTTGAGGAGATTTTAGAGGAGAATCTGGCAGAGAAATTTGGGCTTTTTAAAGGACAGCTTGCTGTGATGATTCAC
ACGGGAAGCAGAGGGTTTGGCCATCAGATTGCTACGGATTATACAAAGATTCTGTGGGAAGCAGCTAAGAGGTATGGGAT
TGAGGTACCGGAAAAAGGGCTTGCAGCAGCCCCTATAAAGTCAAAGGAAGGGCAGAATTACTATAAGGCGATGGCGGCTG
CGGTGAATTTTGCTTTTTCAAACAGGCAGATAATCATGTTTGATGTGATAAGGGCTTTTGAGGATGTTTTAAAAAAATCG
GAAGAAGAGATGGGGTTTAAACTTGTGTATGACGTTGCTCACAATATCGCTAAGTGGGAAGTACATGGGGGGAAAAGGAT
GCTTGTTCACAGGAAAGGAGCTACAAGGGCTTTACCGGCAGGACATCCGCAAAACCCACCTTCCTATAGAGATACAGGAC
ATCCTGCTCTAATTCCTGGCAGTATGGGTACAGGTTCCTATGTGGTGGTCGGAACAGAAAAAGCAGCAGAGACATTTTAT
TCTGTAAATCACGGAGCAGGACGAAGGCTTTCTAGAAATCAGGCTAAGAAGATAAGCAAAGAGGAATTTGAAAGGTCTAT
GGGAGATGTGGTGTACAATGTCCGCTCTTATAAAGACATTGTAGATGAATCTCCTCTTGCGTATAAAGATGTAGAAACAG
TAGTTTCTGTCTTTGAAGAGAGAGGCATTACTATACCTGTTGCAAAGCTTATTCCTCTTGCAGTTGTGAAAGGGGCTGAT
TAA

Upstream 100 bases:

>100_bases
GCTTGTAAAAAAATTTAATGGGCCCCTAATGGGCCCTTTTTCATGCTTTCTATTCTAGATTGTGGTATAATGAAATCACA
GAAAGTGGGGAGGTGAAAAT

Downstream 100 bases:

>100_bases
GGTTTTAAAATGAGGTGAAATAGGTTTCTGGCTATTTTACGGCGATTTTATTAAAAACTTTATAATTTTTTAAATTTTTA
ATGACGGTTTTAAATATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MAVDIIQGYTLVKDGVNKWRIPKFGKMRVDAVVYVNDSLKELLRDDQSLRQLVNAASLPGVVEPVIGMPDIHEGFGLPIG
GVMAIEEKGVISAGAVGYDINCGVRLIRSDLEADYFTKDILYKLIERIEHYVPTGIGKKGRHKGITRVIFDDVVHNGVEA
VIKAGFGKKSDLEYIEEGGKLEGADISAVSEEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFKGQLAVMIH
TGSRGFGHQIATDYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKS
EEEMGFKLVYDVAHNIAKWEVHGGKRMLVHRKGATRALPAGHPQNPPSYRDTGHPALIPGSMGTGSYVVVGTEKAAETFY
SVNHGAGRRLSRNQAKKISKEEFERSMGDVVYNVRSYKDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKGAD

Sequences:

>Translated_480_residues
MAVDIIQGYTLVKDGVNKWRIPKFGKMRVDAVVYVNDSLKELLRDDQSLRQLVNAASLPGVVEPVIGMPDIHEGFGLPIG
GVMAIEEKGVISAGAVGYDINCGVRLIRSDLEADYFTKDILYKLIERIEHYVPTGIGKKGRHKGITRVIFDDVVHNGVEA
VIKAGFGKKSDLEYIEEGGKLEGADISAVSEEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFKGQLAVMIH
TGSRGFGHQIATDYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKS
EEEMGFKLVYDVAHNIAKWEVHGGKRMLVHRKGATRALPAGHPQNPPSYRDTGHPALIPGSMGTGSYVVVGTEKAAETFY
SVNHGAGRRLSRNQAKKISKEEFERSMGDVVYNVRSYKDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKGAD
>Mature_479_residues
AVDIIQGYTLVKDGVNKWRIPKFGKMRVDAVVYVNDSLKELLRDDQSLRQLVNAASLPGVVEPVIGMPDIHEGFGLPIGG
VMAIEEKGVISAGAVGYDINCGVRLIRSDLEADYFTKDILYKLIERIEHYVPTGIGKKGRHKGITRVIFDDVVHNGVEAV
IKAGFGKKSDLEYIEEGGKLEGADISAVSEEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFKGQLAVMIHT
GSRGFGHQIATDYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFSNRQIIMFDVIRAFEDVLKKSE
EEMGFKLVYDVAHNIAKWEVHGGKRMLVHRKGATRALPAGHPQNPPSYRDTGHPALIPGSMGTGSYVVVGTEKAAETFYS
VNHGAGRRLSRNQAKKISKEEFERSMGDVVYNVRSYKDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKGAD

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=491, Percent_Identity=41.3441955193483, Blast_Score=345, Evalue=5e-95,
Organism=Escherichia coli, GI2367224, Length=413, Percent_Identity=31.4769975786925, Blast_Score=158, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI17506665, Length=504, Percent_Identity=40.6746031746032, Blast_Score=348, Evalue=3e-96,
Organism=Drosophila melanogaster, GI24585217, Length=490, Percent_Identity=41.2244897959184, Blast_Score=320, Evalue=2e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52775; Mature: 52644

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDIIQGYTLVKDGVNKWRIPKFGKMRVDAVVYVNDSLKELLRDDQSLRQLVNAASLPG
CCEEEECCCHHHHCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHCCHHHHHHHHHHCCCC
VVEPVIGMPDIHEGFGLPIGGVMAIEEKGVISAGAVGYDINCGVRLIRSDLEADYFTKDI
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCEECCCCHHHHHHHHCHHHHHHHH
LYKLIERIEHYVPTGIGKKGRHKGITRVIFDDVVHNGVEAVIKAGFGKKSDLEYIEEGGK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
LEGADISAVSEEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFKGQLAVMIH
CCCCCHHHHHHHHHHCCHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEE
TGSRGFGHQIATDYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFS
ECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHC
NRQIIMFDVIRAFEDVLKKSEEEMGFKLVYDVAHNIAKWEVHGGKRMLVHRKGATRALPA
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCCCCCCC
GHPQNPPSYRDTGHPALIPGSMGTGSYVVVGTEKAAETFYSVNHGAGRRLSRNQAKKISK
CCCCCCCCCCCCCCCEEECCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHCCH
EEFERSMGDVVYNVRSYKDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKGAD
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCC
>Mature Secondary Structure 
AVDIIQGYTLVKDGVNKWRIPKFGKMRVDAVVYVNDSLKELLRDDQSLRQLVNAASLPG
CEEEECCCHHHHCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHCCHHHHHHHHHHCCCC
VVEPVIGMPDIHEGFGLPIGGVMAIEEKGVISAGAVGYDINCGVRLIRSDLEADYFTKDI
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCEECCCCHHHHHHHHCHHHHHHHH
LYKLIERIEHYVPTGIGKKGRHKGITRVIFDDVVHNGVEAVIKAGFGKKSDLEYIEEGGK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
LEGADISAVSEEAQERGEEQLGTLGGGNHFIEIQKVEEILEENLAEKFGLFKGQLAVMIH
CCCCCHHHHHHHHHHCCHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEE
TGSRGFGHQIATDYTKILWEAAKRYGIEVPEKGLAAAPIKSKEGQNYYKAMAAAVNFAFS
ECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHC
NRQIIMFDVIRAFEDVLKKSEEEMGFKLVYDVAHNIAKWEVHGGKRMLVHRKGATRALPA
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCCCCCCC
GHPQNPPSYRDTGHPALIPGSMGTGSYVVVGTEKAAETFYSVNHGAGRRLSRNQAKKISK
CCCCCCCCCCCCCCCEEECCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHCCH
EEFERSMGDVVYNVRSYKDIVDESPLAYKDVETVVSVFEERGITIPVAKLIPLAVVKGAD
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA