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The map label for this gene is DppC4 [H]

Identifier: 20807108

GI number: 20807108

Start: 619763

End: 620680

Strand: Direct

Name: DppC4 [H]

Synonym: TTE0613

Alternate gene names: 20807108

Gene position: 619763-620680 (Clockwise)

Preceding gene: 20807107

Following gene: 20807109

Centisome position: 23.04

GC content: 42.59

Gene sequence:

>918_bases
GTGGTAGAAATTACTCGTGATAAATTTGAAAGAGTGGGTCCTAATATAGAAGAAAGCCAGGCTATAGTAAGGCCGAGTAT
GACTTACTGGCAAGATGCCTGGAGAAGGCTTAAAATGAATAAAGTTGCCATGGCCTCTTTAGCTTTTTTGATTTTTTTAG
GAATAATGGCAATTATAGGGCCGTATTTACTGCCCTACAAGTATTCTGACCAAAATTTGATGATGACAAATAGACCGCCC
TCTGCAGAGCACTGGTTTGGGACAGATTACCTGGGTAGAGATCTGTTTGTAAGAACTTGGATGGGTGCAAGAATTTCCCT
TACGATAGGTATCGCAGCAGCTTTGCTAGATGGTATAATTGGTGTCATCTACGGCGGAATTTCTGGCTATTTTGGCGGTC
AGGTCGACAACATAATGATGCGCATTGTAGATATACTCTACGGCATACCATATCTCATACTAGTGATACTTCTCATGCTC
GTTATGGGACCTGGAGTTGTAACCATAATCGTTGCCATGGTTATGACGGGTTGGGTTGGAATGGCGAGACTTGTTAGAGG
ACAGGTGCTCCAGCTAAAAGAACAGGAGTTTGTGATGGCAGCTAAAACTTTAGGGGCATCTCCTGCCAGGATAATTTTAA
AGCATTTGATTCCAAATACCATTGGTCCTATAATAGTTAGCATAACTTTTGATGTTCCCGCAGCTATCTTTACAGAAGCT
TTTCTAAGCTATATAGGACTTGGAGTACAACCTCCTCTGGCCAGCTGGGGAACATTGGCAAGCGATGCTACAAACGTGTT
GCTACTCTATCCTTATCAGCTCTTCTTCCCGGCATTTTTCATCAGCATGACAATGCTGTCTTTCAACCTATTAGGTGATG
GATTAAGAGATGCTCTAGACCCGAGGTTGCGCAAATAA

Upstream 100 bases:

>100_bases
TTTTCTACAGCGCTATACTTGTATTCTTGGTATTTGTTGTAGACATAACCTATGGATTAGTAGACCCGAGAATAAGACTT
GCCAAGGGAGGTAAATAAAG

Downstream 100 bases:

>100_bases
GGAGGAGTAGACATGGAGAAAAGGGAAGTTCTTTTAGAGGTAAAGAATTTGGAGTATTCTTTTGACACTTACGCCGGGGA
AGTTAAAGCTGTCAGAGGAG

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MVEITRDKFERVGPNIEESQAIVRPSMTYWQDAWRRLKMNKVAMASLAFLIFLGIMAIIGPYLLPYKYSDQNLMMTNRPP
SAEHWFGTDYLGRDLFVRTWMGARISLTIGIAAALLDGIIGVIYGGISGYFGGQVDNIMMRIVDILYGIPYLILVILLML
VMGPGVVTIIVAMVMTGWVGMARLVRGQVLQLKEQEFVMAAKTLGASPARIILKHLIPNTIGPIIVSITFDVPAAIFTEA
FLSYIGLGVQPPLASWGTLASDATNVLLLYPYQLFFPAFFISMTMLSFNLLGDGLRDALDPRLRK

Sequences:

>Translated_305_residues
MVEITRDKFERVGPNIEESQAIVRPSMTYWQDAWRRLKMNKVAMASLAFLIFLGIMAIIGPYLLPYKYSDQNLMMTNRPP
SAEHWFGTDYLGRDLFVRTWMGARISLTIGIAAALLDGIIGVIYGGISGYFGGQVDNIMMRIVDILYGIPYLILVILLML
VMGPGVVTIIVAMVMTGWVGMARLVRGQVLQLKEQEFVMAAKTLGASPARIILKHLIPNTIGPIIVSITFDVPAAIFTEA
FLSYIGLGVQPPLASWGTLASDATNVLLLYPYQLFFPAFFISMTMLSFNLLGDGLRDALDPRLRK
>Mature_305_residues
MVEITRDKFERVGPNIEESQAIVRPSMTYWQDAWRRLKMNKVAMASLAFLIFLGIMAIIGPYLLPYKYSDQNLMMTNRPP
SAEHWFGTDYLGRDLFVRTWMGARISLTIGIAAALLDGIIGVIYGGISGYFGGQVDNIMMRIVDILYGIPYLILVILLML
VMGPGVVTIIVAMVMTGWVGMARLVRGQVLQLKEQEFVMAAKTLGASPARIILKHLIPNTIGPIIVSITFDVPAAIFTEA
FLSYIGLGVQPPLASWGTLASDATNVLLLYPYQLFFPAFFISMTMLSFNLLGDGLRDALDPRLRK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=288, Percent_Identity=45.1388888888889, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1787054, Length=288, Percent_Identity=39.9305555555556, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1787760, Length=289, Percent_Identity=37.0242214532872, Blast_Score=190, Evalue=9e-50,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=37.1900826446281, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1789964, Length=298, Percent_Identity=36.9127516778523, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787549, Length=282, Percent_Identity=30.4964539007092, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33863; Mature: 33863

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEITRDKFERVGPNIEESQAIVRPSMTYWQDAWRRLKMNKVAMASLAFLIFLGIMAIIG
CCCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PYLLPYKYSDQNLMMTNRPPSAEHWFGTDYLGRDLFVRTWMGARISLTIGIAAALLDGII
HHHCCEEECCCCEEEECCCCCCCCCCCCHHHCCHHHHHHHCCCEEEHHHHHHHHHHHHHH
GVIYGGISGYFGGQVDNIMMRIVDILYGIPYLILVILLMLVMGPGVVTIIVAMVMTGWVG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MARLVRGQVLQLKEQEFVMAAKTLGASPARIILKHLIPNTIGPIIVSITFDVPAAIFTEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHH
FLSYIGLGVQPPLASWGTLASDATNVLLLYPYQLFFPAFFISMTMLSFNLLGDGLRDALD
HHHHHCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRLRK
CCCCC
>Mature Secondary Structure
MVEITRDKFERVGPNIEESQAIVRPSMTYWQDAWRRLKMNKVAMASLAFLIFLGIMAIIG
CCCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PYLLPYKYSDQNLMMTNRPPSAEHWFGTDYLGRDLFVRTWMGARISLTIGIAAALLDGII
HHHCCEEECCCCEEEECCCCCCCCCCCCHHHCCHHHHHHHCCCEEEHHHHHHHHHHHHHH
GVIYGGISGYFGGQVDNIMMRIVDILYGIPYLILVILLMLVMGPGVVTIIVAMVMTGWVG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MARLVRGQVLQLKEQEFVMAAKTLGASPARIILKHLIPNTIGPIIVSITFDVPAAIFTEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHH
FLSYIGLGVQPPLASWGTLASDATNVLLLYPYQLFFPAFFISMTMLSFNLLGDGLRDALD
HHHHHCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRLRK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]