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The map label for this gene is DppB4 [H]

Identifier: 20807107

GI number: 20807107

Start: 618831

End: 619760

Strand: Direct

Name: DppB4 [H]

Synonym: TTE0612

Alternate gene names: 20807107

Gene position: 618831-619760 (Clockwise)

Preceding gene: 20807106

Following gene: 20807108

Centisome position: 23.01

GC content: 39.46

Gene sequence:

>930_bases
TTGCTGCGCTATACCTTAGAGCGGACTTTATATATGATTATCACTTTGTGGGTTATTGTAACTCTCACCTTTTTCTTAAT
GCACATGATACCAGGTGACCCTTTTACAAGTGAAAAAAAGGTGCCTGAGCAGATAAGGCAGAACATGCTCGCTAAATATC
ACCTTGACAAGCCTTTGATTGTTCAGTATGGATATTACTTGAGAAACCTGCTCCATGGAGATTTGGGCATTTCACTTAAA
TATTTAAATAGAACGGTGAATGAAATAATAGCAAACGGTTTTCCTGCGTCATTTCAGATAGGAATGCAGTCTATTATAAT
AGGAGTATTCTTGGGCCTTCTCCTTGGAATTGTGGCGGCCCTAAATAGAAACGGTTTTTGGGATTATGTATCAATGATAC
TTGCTGTTATAGGAAGGTCTGTTCCCAACTTCATCATTGCTACTTTACTGCAGTACTGGCTGGCCTCTAAATGGAAGTTA
TTCCCTGTATCTGGATGGGGAACTTTTGCCCATACGGTGCTTCCTTCAATAGCTCTATCTTTTGCATCTTTGGCTATAAT
TTCTCGTTTGATGAGAGCTAGTATGTTGGATGTCATTGGGCAGGATTATATAAAGACTGCAAAAGCGAAAGGACTTTCAC
CTTTTGAAATTGTCTGGAGGCACATGATAAGAAATGCTGTCTTGCCAGTTATAACAGTGTTAGGGCCTTTGACGGCCGGT
ATTGTTACGGGTACTTTCGTAGTAGAAAGAATATACGGTATTCCTGGACTTGGAAAATACTATGTGCAGAGCATTTACAA
CAATGACTATACGATGATATTGGGAACCACCATTTTCTACAGCGCTATACTTGTATTCTTGGTATTTGTTGTAGACATAA
CCTATGGATTAGTAGACCCGAGAATAAGACTTGCCAAGGGAGGTAAATAA

Upstream 100 bases:

>100_bases
AAAAATAATGAATAGTTTCTAGAATACGCGAATATATATGGCGTAAAGCCATATATATTCGCTGTATATTTAAATTAAAC
GTCTTTGGAGGTGTAAAGAT

Downstream 100 bases:

>100_bases
AGGTGGTAGAAATTACTCGTGATAAATTTGAAAGAGTGGGTCCTAATATAGAAGAAAGCCAGGCTATAGTAAGGCCGAGT
ATGACTTACTGGCAAGATGC

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLRYTLERTLYMIITLWVIVTLTFFLMHMIPGDPFTSEKKVPEQIRQNMLAKYHLDKPLIVQYGYYLRNLLHGDLGISLK
YLNRTVNEIIANGFPASFQIGMQSIIIGVFLGLLLGIVAALNRNGFWDYVSMILAVIGRSVPNFIIATLLQYWLASKWKL
FPVSGWGTFAHTVLPSIALSFASLAIISRLMRASMLDVIGQDYIKTAKAKGLSPFEIVWRHMIRNAVLPVITVLGPLTAG
IVTGTFVVERIYGIPGLGKYYVQSIYNNDYTMILGTTIFYSAILVFLVFVVDITYGLVDPRIRLAKGGK

Sequences:

>Translated_309_residues
MLRYTLERTLYMIITLWVIVTLTFFLMHMIPGDPFTSEKKVPEQIRQNMLAKYHLDKPLIVQYGYYLRNLLHGDLGISLK
YLNRTVNEIIANGFPASFQIGMQSIIIGVFLGLLLGIVAALNRNGFWDYVSMILAVIGRSVPNFIIATLLQYWLASKWKL
FPVSGWGTFAHTVLPSIALSFASLAIISRLMRASMLDVIGQDYIKTAKAKGLSPFEIVWRHMIRNAVLPVITVLGPLTAG
IVTGTFVVERIYGIPGLGKYYVQSIYNNDYTMILGTTIFYSAILVFLVFVVDITYGLVDPRIRLAKGGK
>Mature_309_residues
MLRYTLERTLYMIITLWVIVTLTFFLMHMIPGDPFTSEKKVPEQIRQNMLAKYHLDKPLIVQYGYYLRNLLHGDLGISLK
YLNRTVNEIIANGFPASFQIGMQSIIIGVFLGLLLGIVAALNRNGFWDYVSMILAVIGRSVPNFIIATLLQYWLASKWKL
FPVSGWGTFAHTVLPSIALSFASLAIISRLMRASMLDVIGQDYIKTAKAKGLSPFEIVWRHMIRNAVLPVITVLGPLTAG
IVTGTFVVERIYGIPGLGKYYVQSIYNNDYTMILGTTIFYSAILVFLVFVVDITYGLVDPRIRLAKGGK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=41.3114754098361, Blast_Score=268, Evalue=4e-73,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=34.1176470588235, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=35.2750809061489, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1789888, Length=317, Percent_Identity=35.0157728706625, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=29.4294294294294, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=27.9778393351801, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=26.5917602996255, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34755; Mature: 34755

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYTLERTLYMIITLWVIVTLTFFLMHMIPGDPFTSEKKVPEQIRQNMLAKYHLDKPLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
VQYGYYLRNLLHGDLGISLKYLNRTVNEIIANGFPASFQIGMQSIIIGVFLGLLLGIVAA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNRNGFWDYVSMILAVIGRSVPNFIIATLLQYWLASKWKLFPVSGWGTFAHTVLPSIALS
HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
FASLAIISRLMRASMLDVIGQDYIKTAKAKGLSPFEIVWRHMIRNAVLPVITVLGPLTAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVTGTFVVERIYGIPGLGKYYVQSIYNNDYTMILGTTIFYSAILVFLVFVVDITYGLVDP
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIRLAKGGK
CHHHCCCCC
>Mature Secondary Structure
MLRYTLERTLYMIITLWVIVTLTFFLMHMIPGDPFTSEKKVPEQIRQNMLAKYHLDKPLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
VQYGYYLRNLLHGDLGISLKYLNRTVNEIIANGFPASFQIGMQSIIIGVFLGLLLGIVAA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNRNGFWDYVSMILAVIGRSVPNFIIATLLQYWLASKWKLFPVSGWGTFAHTVLPSIALS
HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
FASLAIISRLMRASMLDVIGQDYIKTAKAKGLSPFEIVWRHMIRNAVLPVITVLGPLTAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVTGTFVVERIYGIPGLGKYYVQSIYNNDYTMILGTTIFYSAILVFLVFVVDITYGLVDP
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIRLAKGGK
CHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]