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The map label for this gene is LdcC [H]

Identifier: 20806622

GI number: 20806622

Start: 96004

End: 97422

Strand: Direct

Name: LdcC [H]

Synonym: TTE0093

Alternate gene names: 20806622

Gene position: 96004-97422 (Clockwise)

Preceding gene: 20806621

Following gene: 20806623

Centisome position: 3.57

GC content: 37.84

Gene sequence:

>1419_bases
ATGTCAACTCCTTTGTACGATGCTCTCATGGAATACGTGAAAAAGGAAACTGTACCTTTTCACATGCCCGGCCATAAACA
AGGAAGAGTATTGCCAAAAGAGTACATTGAAAATTTAGCAAAAATTGATTTGACAGAGGTGCCAGGACTTGACAACCTTC
ACAATCCCGATGGTCCAATCCTTGAAGCTGAGAAGCTTGCAGCAAAGACCTTTGGGTCAAAACAAGCTTTCTTTTTGGTA
AATGGCAGTACTGCTGGAATATATGCGGCCATGTATGCAGTGCTAAACCCTACGGATAAAGTGCTTGTGATGAGGAATTC
TCATAAATCTGTTTACAACGGAGTTGTGCTTACTCAATCGATTCCCGTGTATTTGCTGCCCGAGATAGACTATGAAAATG
GAATTGCGATGGGAATTGATGTAGAAAGGCTAGAGGAGGTTTTGCAAAAAGAAAGAGATGTAAAAGCTGTAGTAGTGACA
TACCCTAATTATTACGGTTTTTGCAGTGATATTGAAAAAATTGTGGATATTGTGCATAAGTACGGTAAAATTTTGATTGT
AGATGAAGCTCATGGGGCTCACTTTCCTTTTTCAAACAATTTGCCTAAGTCCTCCATAAAAGCAGGAGCGGATATTGTAG
TACAGAGCCTGCACAAGACTCTTACTTCTTTTACTCAAACTTCTATACTCCATTTAAATTCTGATAGGGTAGATGTGGAT
CGGTTAAAATATTCTTTAAGCCTTTTTCAATCTACATCTCCTTCTTATATTCTCATGTCTTCAATTGACATGGCAAGAGA
ATACATGGAGAAAGAAGGCAAAAAAAGACTAGAAGAAGTTATTCAATTAGCCCTATATGTAAGAAGAGAGATTGATAAAA
TGGAAGGTATTAGATGTTTAGGAGAAGATATAGTTGGACGGTACGGCATTGTGGATTTTGATGTTACAAAGCTCACTATA
AGTGTAAAGAATTTGGGAATTGAAGGGCCTGAAGCAGAGGATTTTTTGAGGAGAGAATGCAATATACAAGTTGAAATGTC
GGATGTTTACAATATATTAGCGATGGTTACTGTAGGGGATGATGAAAAAAGGGTAAAAATGCTTTTAGAAGGTTTAAAAA
AGCTTTCAAAAAACAGGAAGAGGGTTAAATTTGGGGATAGAATTCTTTTTCCTTCTTTGCCTGAAATGGAGTTGACTCCT
TCGGAAGCTGTGAGGAAAAAGAAGGTGAGGGTACCCTTTGAAAAGGCGGAAGGGGCGATTTCTGCAGATTTTGTGACACC
TTATCCGCCAGGAGTTCCTCTCATATGTCCAGGAGAGAGGATTGAAAAAGATATGGTAAAATATATAGAAGTATTGTATA
ATAAAGGTATTAAGGTTTTGGGTATACAGGATAATTTACTGTCGGTGTGTGAGATATGA

Upstream 100 bases:

>100_bases
AGGATTATATGAAAGATGTCGGGTATGAAAACTGGGTGTAAATCCAGTTTTCTTTTTTTGTGGTATAATGAAAATGAAAA
ATGTTTTGTGGAGGTATTTT

Downstream 100 bases:

>100_bases
GAGGGAAATTTATAAGTTTCGAAGGCATAGACGGATGTGGGAAGACCACACAGGTTAAGCTTTTGGAAGAACATCTTAAA
AAAGAGGGTTATGACCTACT

Product: arginine/lysine/ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MSTPLYDALMEYVKKETVPFHMPGHKQGRVLPKEYIENLAKIDLTEVPGLDNLHNPDGPILEAEKLAAKTFGSKQAFFLV
NGSTAGIYAAMYAVLNPTDKVLVMRNSHKSVYNGVVLTQSIPVYLLPEIDYENGIAMGIDVERLEEVLQKERDVKAVVVT
YPNYYGFCSDIEKIVDIVHKYGKILIVDEAHGAHFPFSNNLPKSSIKAGADIVVQSLHKTLTSFTQTSILHLNSDRVDVD
RLKYSLSLFQSTSPSYILMSSIDMAREYMEKEGKKRLEEVIQLALYVRREIDKMEGIRCLGEDIVGRYGIVDFDVTKLTI
SVKNLGIEGPEAEDFLRRECNIQVEMSDVYNILAMVTVGDDEKRVKMLLEGLKKLSKNRKRVKFGDRILFPSLPEMELTP
SEAVRKKKVRVPFEKAEGAISADFVTPYPPGVPLICPGERIEKDMVKYIEVLYNKGIKVLGIQDNLLSVCEI

Sequences:

>Translated_472_residues
MSTPLYDALMEYVKKETVPFHMPGHKQGRVLPKEYIENLAKIDLTEVPGLDNLHNPDGPILEAEKLAAKTFGSKQAFFLV
NGSTAGIYAAMYAVLNPTDKVLVMRNSHKSVYNGVVLTQSIPVYLLPEIDYENGIAMGIDVERLEEVLQKERDVKAVVVT
YPNYYGFCSDIEKIVDIVHKYGKILIVDEAHGAHFPFSNNLPKSSIKAGADIVVQSLHKTLTSFTQTSILHLNSDRVDVD
RLKYSLSLFQSTSPSYILMSSIDMAREYMEKEGKKRLEEVIQLALYVRREIDKMEGIRCLGEDIVGRYGIVDFDVTKLTI
SVKNLGIEGPEAEDFLRRECNIQVEMSDVYNILAMVTVGDDEKRVKMLLEGLKKLSKNRKRVKFGDRILFPSLPEMELTP
SEAVRKKKVRVPFEKAEGAISADFVTPYPPGVPLICPGERIEKDMVKYIEVLYNKGIKVLGIQDNLLSVCEI
>Mature_471_residues
STPLYDALMEYVKKETVPFHMPGHKQGRVLPKEYIENLAKIDLTEVPGLDNLHNPDGPILEAEKLAAKTFGSKQAFFLVN
GSTAGIYAAMYAVLNPTDKVLVMRNSHKSVYNGVVLTQSIPVYLLPEIDYENGIAMGIDVERLEEVLQKERDVKAVVVTY
PNYYGFCSDIEKIVDIVHKYGKILIVDEAHGAHFPFSNNLPKSSIKAGADIVVQSLHKTLTSFTQTSILHLNSDRVDVDR
LKYSLSLFQSTSPSYILMSSIDMAREYMEKEGKKRLEEVIQLALYVRREIDKMEGIRCLGEDIVGRYGIVDFDVTKLTIS
VKNLGIEGPEAEDFLRRECNIQVEMSDVYNILAMVTVGDDEKRVKMLLEGLKKLSKNRKRVKFGDRILFPSLPEMELTPS
EAVRKKKVRVPFEKAEGAISADFVTPYPPGVPLICPGERIEKDMVKYIEVLYNKGIKVLGIQDNLLSVCEI

Specific function: Catalyzes the formation of agmatine from arginine [H]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI1786384, Length=563, Percent_Identity=25.2220248667851, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1790573, Length=575, Percent_Identity=24.3478260869565, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87082193, Length=590, Percent_Identity=23.2203389830508, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI221142684, Length=331, Percent_Identity=27.4924471299094, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786909, Length=587, Percent_Identity=22.6575809199319, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 53159; Mature: 53028

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLYDALMEYVKKETVPFHMPGHKQGRVLPKEYIENLAKIDLTEVPGLDNLHNPDGPI
CCCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCC
LEAEKLAAKTFGSKQAFFLVNGSTAGIYAAMYAVLNPTDKVLVMRNSHKSVYNGVVLTQS
CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCHHHCCEEEECC
IPVYLLPEIDYENGIAMGIDVERLEEVLQKERDVKAVVVTYPNYYGFCSDIEKIVDIVHK
CCEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
YGKILIVDEAHGAHFPFSNNLPKSSIKAGADIVVQSLHKTLTSFTQTSILHLNSDRVDVD
CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHH
RLKYSLSLFQSTSPSYILMSSIDMAREYMEKEGKKRLEEVIQLALYVRREIDKMEGIRCL
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEDIVGRYGIVDFDVTKLTISVKNLGIEGPEAEDFLRRECNIQVEMSDVYNILAMVTVGD
HHHHHCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEHHHHHEEEEEEEECC
DEKRVKMLLEGLKKLSKNRKRVKFGDRILFPSLPEMELTPSEAVRKKKVRVPFEKAEGAI
CHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHCCCCE
SADFVTPYPPGVPLICPGERIEKDMVKYIEVLYNKGIKVLGIQDNLLSVCEI
EECCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCC
>Mature Secondary Structure 
STPLYDALMEYVKKETVPFHMPGHKQGRVLPKEYIENLAKIDLTEVPGLDNLHNPDGPI
CCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCC
LEAEKLAAKTFGSKQAFFLVNGSTAGIYAAMYAVLNPTDKVLVMRNSHKSVYNGVVLTQS
CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCHHHCCEEEECC
IPVYLLPEIDYENGIAMGIDVERLEEVLQKERDVKAVVVTYPNYYGFCSDIEKIVDIVHK
CCEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
YGKILIVDEAHGAHFPFSNNLPKSSIKAGADIVVQSLHKTLTSFTQTSILHLNSDRVDVD
CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHH
RLKYSLSLFQSTSPSYILMSSIDMAREYMEKEGKKRLEEVIQLALYVRREIDKMEGIRCL
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEDIVGRYGIVDFDVTKLTISVKNLGIEGPEAEDFLRRECNIQVEMSDVYNILAMVTVGD
HHHHHCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEHHHHHEEEEEEEECC
DEKRVKMLLEGLKKLSKNRKRVKFGDRILFPSLPEMELTPSEAVRKKKVRVPFEKAEGAI
CHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHCCCCE
SADFVTPYPPGVPLICPGERIEKDMVKYIEVLYNKGIKVLGIQDNLLSVCEI
EECCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]