Click here to switch to the map view.

The map label for this gene is RPS17A

Identifier: 20095044

GI number: 20095044

Start: 1617430

End: 1617642

Strand: Reverse

Name: RPS17A

Synonym: MK1608

Alternate gene names: 20095044

Gene position: 1617642-1617430 (Counterclockwise)

Preceding gene: 20095045

Following gene: 20095043

Centisome position: 95.44

GC content: 54.93

Gene sequence:

>213_bases
ATGGGTAAGGTTCGACCGACGTTCGTGAAGCGTCCGGCCCGTGAGATCGTGGAGAAGTACGAGGAGTACCTCACCACCGA
CTTCGAGCACAACAAGAAAGTAGTTGAGATCGTCGCGAGACCCAAGACCAAAAAGCTCAGGAACATGATCGCCGGTTACG
TCACGCACCTCATGCGTCTCAAGGAGCGTCAGAGGGAAGAAGGGACAGAGTGA

Upstream 100 bases:

>100_bases
AAGAGGTTTAAAACAGAGGGGCTGGATCCGGCGCTCGCGGACATCGTGCTGGCTTCTATCCTAAAGGTTAGCAAAGAAGT
CCAGCGGGGGGTGATCGGGG

Downstream 100 bases:

>100_bases
CCGGGAGGGGCGTACCCGTTGGGATTTCAGATTGAGGGCGTCATCCCAGCCCTGATCACTCCCTTTACGGACGACCTGAA
AGGGATCAATGAAGAGGGAC

Product: ribosomal protein S17E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MGKVRPTFVKRPAREIVEKYEEYLTTDFEHNKKVVEIVARPKTKKLRNMIAGYVTHLMRLKERQREEGTE

Sequences:

>Translated_70_residues
MGKVRPTFVKRPAREIVEKYEEYLTTDFEHNKKVVEIVARPKTKKLRNMIAGYVTHLMRLKERQREEGTE
>Mature_69_residues
GKVRPTFVKRPAREIVEKYEEYLTTDFEHNKKVVEIVARPKTKKLRNMIAGYVTHLMRLKERQREEGTE

Specific function: Unknown

COG id: COG1383

COG function: function code J; Ribosomal protein S17E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17e family

Homologues:

Organism=Homo sapiens, GI310123353, Length=63, Percent_Identity=55.5555555555556, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI310123351, Length=63, Percent_Identity=55.5555555555556, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI310123349, Length=59, Percent_Identity=57.6271186440678, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI310123357, Length=63, Percent_Identity=55.5555555555556, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4506693, Length=63, Percent_Identity=55.5555555555556, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI310123355, Length=63, Percent_Identity=53.968253968254, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508695, Length=63, Percent_Identity=50.7936507936508, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320655, Length=59, Percent_Identity=47.4576271186441, Blast_Score=63, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323617, Length=59, Percent_Identity=47.4576271186441, Blast_Score=63, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17647889, Length=65, Percent_Identity=56.9230769230769, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS17E_METKA (Q8TUZ3)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614891.1
- ProteinModelPortal:   Q8TUZ3
- SMR:   Q8TUZ3
- GeneID:   1478203
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1608
- NMPDR:   fig|190192.1.peg.1604
- HOGENOM:   HBG460442
- OMA:   MEIADIP
- BioCyc:   MKAN190192:MK1608-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00511
- InterPro:   IPR001210
- InterPro:   IPR018273
- Gene3D:   G3DSA:1.10.60.20
- PANTHER:   PTHR10732

Pfam domain/function: PF00833 Ribosomal_S17e

EC number: NA

Molecular weight: Translated: 8404; Mature: 8273

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS00712 RIBOSOMAL_S17E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVRPTFVKRPAREIVEKYEEYLTTDFEHNKKVVEIVARPKTKKLRNMIAGYVTHLMRL
CCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KERQREEGTE
HHHHHHCCCC
>Mature Secondary Structure 
GKVRPTFVKRPAREIVEKYEEYLTTDFEHNKKVVEIVARPKTKKLRNMIAGYVTHLMRL
CCCCHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KERQREEGTE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014