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The map label for this gene is NMD3

Identifier: 20093955

GI number: 20093955

Start: 480456

End: 481520

Strand: Reverse

Name: NMD3

Synonym: MK0517

Alternate gene names: NA

Gene position: 481520-480456 (Counterclockwise)

Preceding gene: 20093956

Following gene: 20093954

Centisome position: 28.41

GC content: 58.31

Gene sequence:

>1065_bases
CTGATATGTCATCGGTGCGGACGTGAGGTCGATACGACGATAGACGGCCTGTGCCCGGAATGTTACCTTGAAGAGCACCC
GATGATCGAGGTACCCGAAGGACTGGAGGTCCGAGTCTGTGCGCAGTGTTTAGCACGTCACACCGGGCTGCGCTGGGAAG
ATCCGCCTGAAGGTGTCGGGAGTATCGAAGAACTGCTCGTAGAGTACGTCCTCCGGGAGTTGGAGGAGAACCTCCGAACG
CTTCCCGATGTATATGTCCGAATAAAACCTCTGGAGGTTAAGGGTGAACCGGGTGGTCCCGGAGCTCGCGTCCTCGTCGA
GCTGCTCGCTGAGGGTGAATGGGAGGTAGGAGGGGAAGTTCTCACTCGGAAGTATCACCTCAAGGTCCCGGTAGTATTCG
CCCTGTGTGATCGATGCATGAAATTCCGGTCGGGATACTACGAGGCTATACTCCAAGTGCGGTCGCTCCGAGGTAAGCTG
ACCGAGCGTGAGCGGGAGGAAGTTGAGAACTTCGTGACGGAGGCGGCCGCCTCACTGCTCGAGCGTGATCCCATGGCTTA
CATCTCGGACGTGGAGTACCCTGAGGAGGGCATCGACTTCTACATCGGTTCACTCAACGCCGCACGCAAGCTCGCCCGCC
GCCTCGTCGATGCGTACGGCGGGACCGTAGGGGAGTCGCACAAGCTCGTCGGATTCGACCGCGAGCGCAGTAAGCGCAAG
TACAAGGCCGCCATCTCCGTGAGGATACCTCATTTCCGCAAGGGCGACATCCTACTGGTGGATGGCCAACCTTATCTAGT
CACAGGTCTGGGTGAGAGGTGTTCTCTGCGTCATCTCATCAGCAGGGAGGTGGTCAAACGTAAGTGGGAGGAGCTGAAGG
GCGTCGAGGTTCTGAAGCCCGAACCCGCCGTGGTGATCGAAGACACCCCGCCCCGGGTCGTGTTGGAGCGTACGGGTGAA
ACGGTTGAGTGTTATGAAAGCGATGTCGACCTTCACGTCGGACAGCGCGTGTACGTGATTCTGCTGAAAGGTGTCGCCGT
AGTGGTTCCTGAGGAATACCTTTAA

Upstream 100 bases:

>100_bases
GGAAGCCCCTGAAGACAGTACCGTGATCATCGTAGGGGTCGGTAACACCGTGGGCATTCCCGACAACCGCCCGTACGTCT
CGAACGGGGGTGAAGGGTAG

Downstream 100 bases:

>100_bases
CGGACGCAGGACGCCGCCAGGGGGTCTCGTCCGTGGACGTCGAGGAGAGGTTGAAACTCGTAACCCGAAACGCCGTCGAG
GTCGTAACCGAGGAGGAGCT

Product: NMD protein affecting ribosome stability and mRNA decay

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MICHRCGREVDTTIDGLCPECYLEEHPMIEVPEGLEVRVCAQCLARHTGLRWEDPPEGVGSIEELLVEYVLRELEENLRT
LPDVYVRIKPLEVKGEPGGPGARVLVELLAEGEWEVGGEVLTRKYHLKVPVVFALCDRCMKFRSGYYEAILQVRSLRGKL
TEREREEVENFVTEAAASLLERDPMAYISDVEYPEEGIDFYIGSLNAARKLARRLVDAYGGTVGESHKLVGFDRERSKRK
YKAAISVRIPHFRKGDILLVDGQPYLVTGLGERCSLRHLISREVVKRKWEELKGVEVLKPEPAVVIEDTPPRVVLERTGE
TVECYESDVDLHVGQRVYVILLKGVAVVVPEEYL

Sequences:

>Translated_354_residues
MICHRCGREVDTTIDGLCPECYLEEHPMIEVPEGLEVRVCAQCLARHTGLRWEDPPEGVGSIEELLVEYVLRELEENLRT
LPDVYVRIKPLEVKGEPGGPGARVLVELLAEGEWEVGGEVLTRKYHLKVPVVFALCDRCMKFRSGYYEAILQVRSLRGKL
TEREREEVENFVTEAAASLLERDPMAYISDVEYPEEGIDFYIGSLNAARKLARRLVDAYGGTVGESHKLVGFDRERSKRK
YKAAISVRIPHFRKGDILLVDGQPYLVTGLGERCSLRHLISREVVKRKWEELKGVEVLKPEPAVVIEDTPPRVVLERTGE
TVECYESDVDLHVGQRVYVILLKGVAVVVPEEYL
>Mature_354_residues
MICHRCGREVDTTIDGLCPECYLEEHPMIEVPEGLEVRVCAQCLARHTGLRWEDPPEGVGSIEELLVEYVLRELEENLRT
LPDVYVRIKPLEVKGEPGGPGARVLVELLAEGEWEVGGEVLTRKYHLKVPVVFALCDRCMKFRSGYYEAILQVRSLRGKL
TEREREEVENFVTEAAASLLERDPMAYISDVEYPEEGIDFYIGSLNAARKLARRLVDAYGGTVGESHKLVGFDRERSKRK
YKAAISVRIPHFRKGDILLVDGQPYLVTGLGERCSLRHLISREVVKRKWEELKGVEVLKPEPAVVIEDTPPRVVLERTGE
TVECYESDVDLHVGQRVYVILLKGVAVVVPEEYL

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007064 [H]

Pfam domain/function: PF04981 NMD3 [H]

EC number: NA

Molecular weight: Translated: 40140; Mature: 40140

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICHRCGREVDTTIDGLCPECYLEEHPMIEVPEGLEVRVCAQCLARHTGLRWEDPPEGVG
CCCCCCCCCHHHHHHCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
SIEELLVEYVLRELEENLRTLPDVYVRIKPLEVKGEPGGPGARVLVELLAEGEWEVGGEV
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHH
LTRKYHLKVPVVFALCDRCMKFRSGYYEAILQVRSLRGKLTEREREEVENFVTEAAASLL
HHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERDPMAYISDVEYPEEGIDFYIGSLNAARKLARRLVDAYGGTVGESHKLVGFDRERSKRK
HCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
YKAAISVRIPHFRKGDILLVDGQPYLVTGLGERCSLRHLISREVVKRKWEELKGVEVLKP
HHHEEEEECCCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEECC
EPAVVIEDTPPRVVLERTGETVECYESDVDLHVGQRVYVILLKGVAVVVPEEYL
CCCEEECCCCCEEEEECCCCEEEEHHCCCCEECCCEEEEHEECCCEEECCCCCC
>Mature Secondary Structure
MICHRCGREVDTTIDGLCPECYLEEHPMIEVPEGLEVRVCAQCLARHTGLRWEDPPEGVG
CCCCCCCCCHHHHHHCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
SIEELLVEYVLRELEENLRTLPDVYVRIKPLEVKGEPGGPGARVLVELLAEGEWEVGGEV
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHH
LTRKYHLKVPVVFALCDRCMKFRSGYYEAILQVRSLRGKLTEREREEVENFVTEAAASLL
HHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERDPMAYISDVEYPEEGIDFYIGSLNAARKLARRLVDAYGGTVGESHKLVGFDRERSKRK
HCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
YKAAISVRIPHFRKGDILLVDGQPYLVTGLGERCSLRHLISREVVKRKWEELKGVEVLKP
HHHEEEEECCCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEECC
EPAVVIEDTPPRVVLERTGETVECYESDVDLHVGQRVYVILLKGVAVVVPEEYL
CCCEEECCCCCEEEEECCCCEEEEHHCCCCEECCCEEEEHEECCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]