Click here to switch to the map view.

The map label for this gene is RPL15A

Identifier: 20093827

GI number: 20093827

Start: 372312

End: 372905

Strand: Reverse

Name: RPL15A

Synonym: MK0389

Alternate gene names: 20093827

Gene position: 372905-372312 (Counterclockwise)

Preceding gene: 20093828

Following gene: 20093826

Centisome position: 22.0

GC content: 59.76

Gene sequence:

>594_bases
GTGGATGCCGTGTCGATGTACAAGTACCAGCGGGAGGCGTGGAAGCGACCCAAGGACTCTTACGTCGGAGAGCTGTTGAA
GGAGCGTCTCCCGAAGTGGCGTAAGGGACCGTCGGTCCAGCGTATTAAGCGTCCGACGAGAATCGAGCGAGCACGTCGAC
TCGGGTACCGAGCCAAGCCCGGCTACGTGGTCGTCCGCGTACGCGTACCCAAGGGAGGTCGTCGCAAGTCGAGACCGAAG
AAGGGTCGTCGTCCCAAGCGTATGGGTAAGAACAAGTTCTCACCGGGCAAGAGCAAGCAGTGGATAGCCGAGGAGCGCGC
CCAGCGTAAGTACCCGAACCTGGAGGTGCTCAATTCCTACTGGGTCGGTGAGGACGGTCAGTACAAGTACTATGAGGTGA
TAATGGTAGACCCGTATCACCCGCAGATCAAGAGCGACCACCGCATTAACTGGATCTGTCAGAAGTCCCAGAAAGGACGC
GTGTTCCGTGGTAAGACCGGGGCGGGCAAGAAGGCTCGAGGACTGCGGAAGCGCGGTAAGGGTGCCGAGAAAGTCAGACC
GAGCCTTCGGGCCCACAGGAGGCGCGGTAAGTGA

Upstream 100 bases:

>100_bases
ACCCTCGAGGAGATCGAGGAAGGCTCGTCCCCATAGGCGTCAACCCGTGGATGATCCTTCACGGTAAACTCTTAAGTCGG
TGTGGGCCGGCCGCGAAGGG

Downstream 100 bases:

>100_bases
TCCCCTTCGCCGCGCCCTCATCGGGGTCGTACCTTGACTCTCCCCGTCAACAGTATCTCGGCCCGCGTGATCGCCCACGC
TACTGAGGACGAGAAGAAAG

Product: 50S ribosomal protein L15e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MDAVSMYKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPK
KGRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGR
VFRGKTGAGKKARGLRKRGKGAEKVRPSLRAHRRRGK

Sequences:

>Translated_197_residues
MDAVSMYKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPK
KGRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGR
VFRGKTGAGKKARGLRKRGKGAEKVRPSLRAHRRRGK
>Mature_197_residues
MDAVSMYKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPK
KGRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGR
VFRGKTGAGKKARGLRKRGKGAEKVRPSLRAHRRRGK

Specific function: Unknown

COG id: COG1632

COG function: function code J; Ribosomal protein L15E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15e family

Homologues:

Organism=Homo sapiens, GI15431293, Length=194, Percent_Identity=43.298969072165, Blast_Score=147, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI17541432, Length=180, Percent_Identity=45.5555555555556, Blast_Score=126, Evalue=8e-30,
Organism=Saccharomyces cerevisiae, GI6323057, Length=176, Percent_Identity=43.75, Blast_Score=140, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6323769, Length=176, Percent_Identity=43.75, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL15E_METKA (Q8TYB3)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613674.1
- ProteinModelPortal:   Q8TYB3
- SMR:   Q8TYB3
- GeneID:   1477692
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0389
- NMPDR:   fig|190192.1.peg.387
- HOGENOM:   HBG577798
- OMA:   KWYEVIL
- ProtClustDB:   PRK04243
- BioCyc:   MKAN190192:MK0389-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00256
- InterPro:   IPR000439
- InterPro:   IPR020926
- InterPro:   IPR020925
- InterPro:   IPR012678
- Gene3D:   G3DSA:3.40.1120.10
- PANTHER:   PTHR11847

Pfam domain/function: PF00827 Ribosomal_L15e; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 23357; Mature: 23357

Theoretical pI: Translated: 11.89; Mature: 11.89

Prosite motif: PS01194 RIBOSOMAL_L15E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVSMYKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKP
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHCHHHHHHHHHCCCCCCC
GYVVVRVRVPKGGRRKSRPKKGRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSY
CEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHC
WVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGLRKRGK
CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHCC
GAEKVRPSLRAHRRRGK
CHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDAVSMYKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKP
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHCHHHHHHHHHCCCCCCC
GYVVVRVRVPKGGRRKSRPKKGRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSY
CEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHC
WVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGLRKRGK
CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHCC
GAEKVRPSLRAHRRRGK
CHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014