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The map label for this gene is 20093826

Identifier: 20093826

GI number: 20093826

Start: 371817

End: 372278

Strand: Reverse

Name: 20093826

Synonym: MK0388

Alternate gene names: NA

Gene position: 372278-371817 (Counterclockwise)

Preceding gene: 20093827

Following gene: 20093825

Centisome position: 21.96

GC content: 58.66

Gene sequence:

>462_bases
TTGACTCTCCCCGTCAACAGTATCTCGGCCCGCGTGATCGCCCACGCTACTGAGGACGAGAAGAAAGTTCTCGAGGCGTT
GGCGAACGTATTAGGTGGTGTCCTCGAGGAGGGAGACGTCGAGCCCGAGACGTTCTACGCGGAGGGACACCACGGGAACC
CGATCACCATCTTTCAAGTCAAGATCGACAGACCGAAGTACATCGAGCGAGTTCTGGAACACTGGCGTGAGAACATACCG
GAGGAGGAGCGGAGGCGCGTGTGGAGTGACATCGAGCGGCGAGTAGACGACAAGGGCAACCTCTACCTGCGCTTCGACAA
GCAGAGCGCCTACAAGGGGGAGCTGCGGATATCGGACGCAGACGATGTGATCAGGGTGAAAGTCAACCTGGAGAGCTACC
CTGCGAGCCGCGAGGGGGGCATAAAGACGCTAGAGCGGCTCGGTATCTTCTCCAACGATTGA

Upstream 100 bases:

>100_bases
GAAGCGCGGTAAGGGTGCCGAGAAAGTCAGACCGAGCCTTCGGGCCCACAGGAGGCGCGGTAAGTGATCCCCTTCGCCGC
GCCCTCATCGGGGTCGTACC

Downstream 100 bases:

>100_bases
GGGTTTCCGAGAACTTCGCCCTTCGAGTTCACGTCGACGAGGTAGACCCCCTGAGGATGGCTCTGGCCGCCGAGCGTTTG
GACTACGAGATCGCCGTCCT

Product: exosome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MTLPVNSISARVIAHATEDEKKVLEALANVLGGVLEEGDVEPETFYAEGHHGNPITIFQVKIDRPKYIERVLEHWRENIP
EEERRRVWSDIERRVDDKGNLYLRFDKQSAYKGELRISDADDVIRVKVNLESYPASREGGIKTLERLGIFSND

Sequences:

>Translated_153_residues
MTLPVNSISARVIAHATEDEKKVLEALANVLGGVLEEGDVEPETFYAEGHHGNPITIFQVKIDRPKYIERVLEHWRENIP
EEERRRVWSDIERRVDDKGNLYLRFDKQSAYKGELRISDADDVIRVKVNLESYPASREGGIKTLERLGIFSND
>Mature_152_residues
TLPVNSISARVIAHATEDEKKVLEALANVLGGVLEEGDVEPETFYAEGHHGNPITIFQVKIDRPKYIERVLEHWRENIPE
EERRRVWSDIERRVDDKGNLYLRFDKQSAYKGELRISDADDVIRVKVNLESYPASREGGIKTLERLGIFSND

Specific function: Unknown

COG id: COG1325

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022803
- InterPro:   IPR002739 [H]

Pfam domain/function: PF01877 DUF54 [H]

EC number: NA

Molecular weight: Translated: 17589; Mature: 17458

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPVNSISARVIAHATEDEKKVLEALANVLGGVLEEGDVEPETFYAEGHHGNPITIFQV
CCCCCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEE
KIDRPKYIERVLEHWRENIPEEERRRVWSDIERRVDDKGNLYLRFDKQSAYKGELRISDA
EECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECC
DDVIRVKVNLESYPASREGGIKTLERLGIFSND
CCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLPVNSISARVIAHATEDEKKVLEALANVLGGVLEEGDVEPETFYAEGHHGNPITIFQV
CCCCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEE
KIDRPKYIERVLEHWRENIPEEERRRVWSDIERRVDDKGNLYLRFDKQSAYKGELRISDA
EECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECC
DDVIRVKVNLESYPASREGGIKTLERLGIFSND
CCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]