Click here to switch to the map view.

The map label for this gene is 20093782

Identifier: 20093782

GI number: 20093782

Start: 335153

End: 336226

Strand: Direct

Name: 20093782

Synonym: MK0344

Alternate gene names: NA

Gene position: 335153-336226 (Clockwise)

Preceding gene: 20093781

Following gene: 20093783

Centisome position: 19.77

GC content: 58.1

Gene sequence:

>1074_bases
ATGATTCCACCGTTCCAAGCTTTAGTAACGTGTCCCGCCGGGTTCGAATTCCGTTGTGTCGAAGAGCTCGAGGATATACT
CAAAGAGCAGGACCCGTACGCGGAGGCGGAACCTACGTACTTCAAAGGCGTCGTAGTGGTGCGATCGGATCTAGAACCGG
AAGAGATCGTCGAAATGATGAAAGATGCGGACACGGATTGGGTAGCTAAGATCGTCCCCATCCACCGAACCGTACGCGCC
GACCTGGACGTGATGAAACGCACGGCCACGATCCTAGCGCGACGGAAGCTGGACGAAAACACGTCGTTCGCAGTACGATG
CCGAAAGCGGGGCCAACCACCGTTCGGACAGCGAGAGGTCGAGGTGGAGGTAGGTGCGGCGGTACAGGAGGCGACCGGCG
CCCCCGTGGACTTGGAGAATCCCGACTACTACGTCTGGATCGAGGTACTACAGGATACCGCCGGGATCTCAGTGGTCCCT
CCGGATCTCATCGTCAGCAAAGAAGTCAAGCGAGTACGCAAATGGAGTCCCGGGATGAGACCTATCTCCAGAGCTCAGCT
CAAACTCAGGGAGCTACTGAAGCGCCATCCGTACATCGTACGGGAAGGTTCCGACGTGATCGACCTCGGGGCCGCACCGG
GTGGTTGGAGCTACGAACTGGCGAGAAGAGTAGAGCCAGGGACAGTATACGCCGTAGATCCGGGGGACTTACACCCGAAG
GTTCTCAAGCTCGACAACGTCGTACACCTCAAGAAAAGGGCCGAAGAGCTAACCGAGGACGACATCGAGGGTCGTATCAG
GTTGGTCACGAGCGATCTCAACAGGATCCACACCGAAGCCACGGAGGTCACTCTCAGCGTCGCGGACGAATTCCTCGAGC
CTGGGGGATTCATAGTACAGACGGTGAAGCTGGCCGTTGACCCGTCTACCGGGGAATACGCCGCGCCGGACGTGGAGACG
GCGGTCTCAGAAGTCGAACTCGAATATGAGCGCCGCGGGTACGAGATACTGGCTATCGAGCGCTTGAAACGGAATACACC
CAACGAGCGGACTCTAGTAGCTCGGAAGGTGTGA

Upstream 100 bases:

>100_bases
CTGGAAGAACTGGAGCGTCGCCGTGAAGACGTTCGAGACGAGCTCCCGGACCTACTATCACAGCACCCGGACGCGCCCGA
AGTACCGGAGGACTGGTAGG

Downstream 100 bases:

>100_bases
TCAGCGTTCCGGCCGCTGTTTCGAAGGATCTCACGGCGTGACAGCTCCGTAGCGACAGCCTCGAGAAGTTGGGCCCGCGA
GGCCTGACTCCCGCTCGACC

Product: 23S rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MIPPFQALVTCPAGFEFRCVEELEDILKEQDPYAEAEPTYFKGVVVVRSDLEPEEIVEMMKDADTDWVAKIVPIHRTVRA
DLDVMKRTATILARRKLDENTSFAVRCRKRGQPPFGQREVEVEVGAAVQEATGAPVDLENPDYYVWIEVLQDTAGISVVP
PDLIVSKEVKRVRKWSPGMRPISRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELARRVEPGTVYAVDPGDLHPK
VLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDLNRIHTEATEVTLSVADEFLEPGGFIVQTVKLAVDPSTGEYAAPDVET
AVSEVELEYERRGYEILAIERLKRNTPNERTLVARKV

Sequences:

>Translated_357_residues
MIPPFQALVTCPAGFEFRCVEELEDILKEQDPYAEAEPTYFKGVVVVRSDLEPEEIVEMMKDADTDWVAKIVPIHRTVRA
DLDVMKRTATILARRKLDENTSFAVRCRKRGQPPFGQREVEVEVGAAVQEATGAPVDLENPDYYVWIEVLQDTAGISVVP
PDLIVSKEVKRVRKWSPGMRPISRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELARRVEPGTVYAVDPGDLHPK
VLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDLNRIHTEATEVTLSVADEFLEPGGFIVQTVKLAVDPSTGEYAAPDVET
AVSEVELEYERRGYEILAIERLKRNTPNERTLVARKV
>Mature_357_residues
MIPPFQALVTCPAGFEFRCVEELEDILKEQDPYAEAEPTYFKGVVVVRSDLEPEEIVEMMKDADTDWVAKIVPIHRTVRA
DLDVMKRTATILARRKLDENTSFAVRCRKRGQPPFGQREVEVEVGAAVQEATGAPVDLENPDYYVWIEVLQDTAGISVVP
PDLIVSKEVKRVRKWSPGMRPISRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELARRVEPGTVYAVDPGDLHPK
VLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDLNRIHTEATEVTLSVADEFLEPGGFIVQTVKLAVDPSTGEYAAPDVET
AVSEVELEYERRGYEILAIERLKRNTPNERTLVARKV

Specific function: Unknown

COG id: COG1818

COG function: function code R; Predicted RNA-binding protein, contains THUMP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002877
- InterPro:   IPR004114 [H]

Pfam domain/function: PF01728 FtsJ; PF02926 THUMP [H]

EC number: NA

Molecular weight: Translated: 40218; Mature: 40218

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS51165 THUMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPPFQALVTCPAGFEFRCVEELEDILKEQDPYAEAEPTYFKGVVVVRSDLEPEEIVEMM
CCCCCHHHEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHH
KDADTDWVAKIVPIHRTVRADLDVMKRTATILARRKLDENTSFAVRCRKRGQPPFGQREV
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCEEE
EVEVGAAVQEATGAPVDLENPDYYVWIEVLQDTAGISVVPPDLIVSKEVKRVRKWSPGMR
EEEECCHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCCCC
PISRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELARRVEPGTVYAVDPGDLHPK
CHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCC
VLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDLNRIHTEATEVTLSVADEFLEPGGFIVQ
EEECCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TVKLAVDPSTGEYAAPDVETAVSEVELEYERRGYEILAIERLKRNTPNERTLVARKV
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MIPPFQALVTCPAGFEFRCVEELEDILKEQDPYAEAEPTYFKGVVVVRSDLEPEEIVEMM
CCCCCHHHEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHH
KDADTDWVAKIVPIHRTVRADLDVMKRTATILARRKLDENTSFAVRCRKRGQPPFGQREV
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCEEE
EVEVGAAVQEATGAPVDLENPDYYVWIEVLQDTAGISVVPPDLIVSKEVKRVRKWSPGMR
EEEECCHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCCCC
PISRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELARRVEPGTVYAVDPGDLHPK
CHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCC
VLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDLNRIHTEATEVTLSVADEFLEPGGFIVQ
EEECCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TVKLAVDPSTGEYAAPDVETAVSEVELEYERRGYEILAIERLKRNTPNERTLVARKV
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]