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The map label for this gene is UbiD [C]

Identifier: 20093674

GI number: 20093674

Start: 219392

End: 220681

Strand: Direct

Name: UbiD [C]

Synonym: MK0234

Alternate gene names: 20093674

Gene position: 219392-220681 (Clockwise)

Preceding gene: 20093673

Following gene: 20093678

Centisome position: 12.94

GC content: 64.57

Gene sequence:

>1290_bases
TTGAGGGATTTTCTGAGGTGCGTAGAGGACGATTTGGTGGTAGTCAAGGAGGAGTTGTCGCCGGAGTACGAGGTGCCGGC
GGTTCTCCAGGAACTCGATAGACCGGTGGTGTTCGAGGGCGTCGAAGGCTACGACATCCCGCTGGTAGGTAACCTATGTT
GTAGTCGGGAGTACTTGGTGAGGGCACTAGGAGCGGAATCCTGGGACGATGTCCTGCGGAAACTCGCGGAGGCTATGGAC
TCGCCGAAGGAACCGCGGAAAGAACGCTCCCCGTCGTTCCTCGAAGCCGAGCGTGGACCCGAGTTCCTGAAGGAGTTTCC
GATGTGTCGATTTTACCGGACTGACGGTGGTCCCTACCTCACGGCCTCCCTGGTCGTCGCGGTCGAGCCCGAGGAAGGCA
TCCCCAACGCGTCCGTGCACAGGATGATGTACCTCGGTGACGGCAAGTTCGCGGTACGGGTCGTCCCCCGTCATCTCTAC
AGATACTACGAGAAGGCCGACCACGATCTACCCGTGGCGGTGTGCCTGGGAGTGGACCCGCGGACGATGTTCGCGTGCTG
CGCCCGCGTACCGTATGAAGTCAGCGAGCTGGACGTCGCGGCGGCGTTCTGGGAGGACCTCCGGGTGTACGAGGTTGACT
ACGGGATCCCGGTACCCGCGGAGAGCGAGATCGTTATGGTGGGTAGACTGACCCCCGAGCGTGCCCCGGAAGGGCCCTTC
GTGGACGTGACGCGCACCTTGGACGAACGGCGTCGCGAGCCCGTCTTCGAGGTCGAGAAGGTGTACACCCGGGAGGACCC
GTACCACCCGATAATCCTCCCGGGCGGAGAGGAGCACCGGATCATGATGGGCGGTCCCGCCGAGGCCACGGTCCTCGCTC
ACGTCTCCCGGGTGTCGGAGGTGGTCAAGGTCAGACTGACTCCGGGCGGGGGAAGGTGGCTCCACGCGGTGGTATCGATA
CGGAAGCGCACGGAAGGTGAGGCCGTGAACGCCGGCCTCGCCGCGCTGGCGGCCCATCCGAGCCTGAAGCACGTGGTGGT
CGTGGACGAAGACGTGGACCCGGACGATCCGGAACAAGTCGAGTACGCGCTCGCGACGAGGTTCCAGGCGGATCGCGACC
TGCACGTGGTGAGGGGTCTCGGGTCCACCCTCGACCCGTCGGCGGAGGAGGGGATCATGGCGAAGGCCGTGTTCGACGCG
ACGGCCCCGGTGGAGAAAAGGGAACGGTTCGAGGTGGTCGAGGTGCCCGTGAGCGATCGGGTCCGGCGGATCCTGGACGA
ACTACCTTAG

Upstream 100 bases:

>100_bases
CGTCGGGATCAGGTTCACCAACCTGTAGGGGGTCCGCCCGCGTCCCGATCTTCACCCCATCCGCTCGGGACTTTGTCTTC
ATCCCCCAGGGGGCGCCGCG

Downstream 100 bases:

>100_bases
GTCCACGGTGTGCTCCAGCTCCGGTCCCGTGGATACTATCGTCACGGGTACCCCGACGGCCTCCTCCACCTTCTCGACGA
ACTTCTTCGCCTCGGTGGGA

Product: decarboxylase related 3-polyprenyl-4-hydroxybenzoate decarboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MRDFLRCVEDDLVVVKEELSPEYEVPAVLQELDRPVVFEGVEGYDIPLVGNLCCSREYLVRALGAESWDDVLRKLAEAMD
SPKEPRKERSPSFLEAERGPEFLKEFPMCRFYRTDGGPYLTASLVVAVEPEEGIPNASVHRMMYLGDGKFAVRVVPRHLY
RYYEKADHDLPVAVCLGVDPRTMFACCARVPYEVSELDVAAAFWEDLRVYEVDYGIPVPAESEIVMVGRLTPERAPEGPF
VDVTRTLDERRREPVFEVEKVYTREDPYHPIILPGGEEHRIMMGGPAEATVLAHVSRVSEVVKVRLTPGGGRWLHAVVSI
RKRTEGEAVNAGLAALAAHPSLKHVVVVDEDVDPDDPEQVEYALATRFQADRDLHVVRGLGSTLDPSAEEGIMAKAVFDA
TAPVEKRERFEVVEVPVSDRVRRILDELP

Sequences:

>Translated_429_residues
MRDFLRCVEDDLVVVKEELSPEYEVPAVLQELDRPVVFEGVEGYDIPLVGNLCCSREYLVRALGAESWDDVLRKLAEAMD
SPKEPRKERSPSFLEAERGPEFLKEFPMCRFYRTDGGPYLTASLVVAVEPEEGIPNASVHRMMYLGDGKFAVRVVPRHLY
RYYEKADHDLPVAVCLGVDPRTMFACCARVPYEVSELDVAAAFWEDLRVYEVDYGIPVPAESEIVMVGRLTPERAPEGPF
VDVTRTLDERRREPVFEVEKVYTREDPYHPIILPGGEEHRIMMGGPAEATVLAHVSRVSEVVKVRLTPGGGRWLHAVVSI
RKRTEGEAVNAGLAALAAHPSLKHVVVVDEDVDPDDPEQVEYALATRFQADRDLHVVRGLGSTLDPSAEEGIMAKAVFDA
TAPVEKRERFEVVEVPVSDRVRRILDELP
>Mature_429_residues
MRDFLRCVEDDLVVVKEELSPEYEVPAVLQELDRPVVFEGVEGYDIPLVGNLCCSREYLVRALGAESWDDVLRKLAEAMD
SPKEPRKERSPSFLEAERGPEFLKEFPMCRFYRTDGGPYLTASLVVAVEPEEGIPNASVHRMMYLGDGKFAVRVVPRHLY
RYYEKADHDLPVAVCLGVDPRTMFACCARVPYEVSELDVAAAFWEDLRVYEVDYGIPVPAESEIVMVGRLTPERAPEGPF
VDVTRTLDERRREPVFEVEKVYTREDPYHPIILPGGEEHRIMMGGPAEATVLAHVSRVSEVVKVRLTPGGGRWLHAVVSI
RKRTEGEAVNAGLAALAAHPSLKHVVVVDEDVDPDDPEQVEYALATRFQADRDLHVVRGLGSTLDPSAEEGIMAKAVFDA
TAPVEKRERFEVVEVPVSDRVRRILDELP

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=453, Percent_Identity=26.9315673289183, Blast_Score=100, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6320748, Length=428, Percent_Identity=24.0654205607477, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 48147; Mature: 48147

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDFLRCVEDDLVVVKEELSPEYEVPAVLQELDRPVVFEGVEGYDIPLVGNLCCSREYLV
CCHHHHHHHHHHEEEEHHCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHCHHHHH
RALGAESWDDVLRKLAEAMDSPKEPRKERSPSFLEAERGPEFLKEFPMCRFYRTDGGPYL
HHHCCCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCHHHHHHCCCEEEEECCCCCEE
TASLVVAVEPEEGIPNASVHRMMYLGDGKFAVRVVPRHLYRYYEKADHDLPVAVCLGVDP
EEEEEEEECCCCCCCCCHHEEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCH
RTMFACCARVPYEVSELDVAAAFWEDLRVYEVDYGIPVPAESEIVMVGRLTPERAPEGPF
HHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCE
VDVTRTLDERRREPVFEVEKVYTREDPYHPIILPGGEEHRIMMGGPAEATVLAHVSRVSE
EHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHHHHH
VVKVRLTPGGGRWLHAVVSIRKRTEGEAVNAGLAALAAHPSLKHVVVVDEDVDPDDPEQV
EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH
EYALATRFQADRDLHVVRGLGSTLDPSAEEGIMAKAVFDATAPVEKRERFEVVEVPVSDR
HHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCEEEHHHHCCCCCHHHHCCCEEEECCHHHH
VRRILDELP
HHHHHHHCC
>Mature Secondary Structure
MRDFLRCVEDDLVVVKEELSPEYEVPAVLQELDRPVVFEGVEGYDIPLVGNLCCSREYLV
CCHHHHHHHHHHEEEEHHCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHHHCHHHHH
RALGAESWDDVLRKLAEAMDSPKEPRKERSPSFLEAERGPEFLKEFPMCRFYRTDGGPYL
HHHCCCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCHHHHHHCCCEEEEECCCCCEE
TASLVVAVEPEEGIPNASVHRMMYLGDGKFAVRVVPRHLYRYYEKADHDLPVAVCLGVDP
EEEEEEEECCCCCCCCCHHEEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCH
RTMFACCARVPYEVSELDVAAAFWEDLRVYEVDYGIPVPAESEIVMVGRLTPERAPEGPF
HHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCE
VDVTRTLDERRREPVFEVEKVYTREDPYHPIILPGGEEHRIMMGGPAEATVLAHVSRVSE
EHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHHHHH
VVKVRLTPGGGRWLHAVVSIRKRTEGEAVNAGLAALAAHPSLKHVVVVDEDVDPDDPEQV
EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH
EYALATRFQADRDLHVVRGLGSTLDPSAEEGIMAKAVFDATAPVEKRERFEVVEVPVSDR
HHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCEEEHHHHCCCCCHHHHCCCEEEECCHHHH
VRRILDELP
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]