Click here to switch to the map view.

The map label for this gene is HypC [H]

Identifier: 20093667

GI number: 20093667

Start: 214461

End: 214739

Strand: Reverse

Name: HypC [H]

Synonym: MK0227

Alternate gene names: 20093667

Gene position: 214739-214461 (Counterclockwise)

Preceding gene: 20093671

Following gene: 20093666

Centisome position: 12.67

GC content: 56.27

Gene sequence:

>279_bases
GTGTGCTTGGCGATTCCCGGAAGGATCGTGGAGCTCGATGGCAACCGCGCTGTGGTGGACTTCGGAGGCGTACGACAGGA
GGTCGACGTGAGCTTGCTGGAGGACGTGGAGGAGGGCGATTGGGTCATCGTTCACACGGGTTTCGCGATTCAGAAGCTAG
ATGAGGAGGAAGCACGAGCGTCCCTTGAGATCTGGGAAGAAGTTCTGAAACACATCGAGGAGGAGCTTGAAAATGACACG
TCGGGAGTTCGTGAGAAAGCTCGTCCGTCGAATCCATAA

Upstream 100 bases:

>100_bases
GTGTGCTCGATCTCCTCCCACGGCACCGGAGCTTCCCCCTGGCCCTCGGGAGAAAATACGAAAGAAGTTCTTCGGTTCAA
CCCAGCGGGGTGTGGACGAC

Downstream 100 bases:

>100_bases
GGAGGCCGAGACCCTCGATCGTGATGTGACGATCATGCACGTGTGTGGATCCCATGAACGGACTATAGTCGAACACGGTC
TCAGATCGTTGCTTCCCGAG

Product: hydrogenase maturation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MCLAIPGRIVELDGNRAVVDFGGVRQEVDVSLLEDVEEGDWVIVHTGFAIQKLDEEEARASLEIWEEVLKHIEEELENDT
SGVREKARPSNP

Sequences:

>Translated_92_residues
MCLAIPGRIVELDGNRAVVDFGGVRQEVDVSLLEDVEEGDWVIVHTGFAIQKLDEEEARASLEIWEEVLKHIEEELENDT
SGVREKARPSNP
>Mature_92_residues
MCLAIPGRIVELDGNRAVVDFGGVRQEVDVSLLEDVEEGDWVIVHTGFAIQKLDEEEARASLEIWEEVLKHIEEELENDT
SGVREKARPSNP

Specific function: Required for production of hydrogenase [H]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

Organism=Escherichia coli, GI1789083, Length=75, Percent_Identity=38.6666666666667, Blast_Score=64, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 10328; Mature: 10328

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLAIPGRIVELDGNRAVVDFGGVRQEVDVSLLEDVEEGDWVIVHTGFAIQKLDEEEARA
CEEECCCEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHCCHHHHHH
SLEIWEEVLKHIEEELENDTSGVREKARPSNP
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MCLAIPGRIVELDGNRAVVDFGGVRQEVDVSLLEDVEEGDWVIVHTGFAIQKLDEEEARA
CEEECCCEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHCCHHHHHH
SLEIWEEVLKHIEEELENDTSGVREKARPSNP
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954 [H]